Cdip009806.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cloeon dipterum
Gene Symbol
-
Assembly
GCA_949628265.1
Location
OX451261.1:24813526-24818571[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 5.9e-06 0.00042 20.7 2.7 1 23 286 308 286 308 0.97
2 18 0.00015 0.011 16.2 2.4 1 20 314 333 314 336 0.94
3 18 4.6e-06 0.00033 21.0 1.5 1 23 342 364 342 364 0.99
4 18 0.00026 0.018 15.5 3.9 1 21 370 390 370 392 0.91
5 18 0.0001 0.0075 16.7 4.7 1 23 398 420 398 420 0.99
6 18 1.6e-05 0.0011 19.3 5.7 1 23 426 448 426 448 0.97
7 18 1.4e-06 9.9e-05 22.6 7.1 1 23 454 476 454 476 0.96
8 18 1.4e-07 1e-05 25.8 3.3 1 23 482 504 482 504 0.98
9 18 5.6e-05 0.0041 17.6 6.7 1 23 510 532 510 532 0.97
10 18 1.7e-05 0.0012 19.2 6.7 1 23 538 560 538 560 0.98
11 18 2.3e-06 0.00017 21.9 3.1 1 23 566 588 566 588 0.98
12 18 2.7e-06 0.00019 21.7 8.0 1 23 594 616 594 616 0.98
13 18 2.7e-05 0.0019 18.6 6.1 1 23 622 644 622 644 0.98
14 18 7.3e-06 0.00052 20.4 7.7 1 23 650 672 650 672 0.98
15 18 0.0017 0.12 12.9 9.2 1 21 678 698 678 700 0.94
16 18 6.3e-05 0.0045 17.4 0.5 1 23 706 728 706 728 0.97
17 18 0.01 0.73 10.5 4.0 1 23 734 756 734 756 0.98
18 18 1.5e-06 0.00011 22.5 1.1 1 23 762 784 762 784 0.98

Sequence Information

Coding Sequence
ATGCAAGAATCTAGTCAAGAAACAGTCACTGAACCGGATAATGGCGCCAAAACCACAACAAATGAAGCCCAAGCTGGCTCATCCAGCACTGGTATTCCTAGCTTGGCCAAATATTGGGTTGTGACCAACTTCTTCCAAGGGCCATCCTCACCTTACAGTCTACCAAGCAAGAGCGACAAAGAGGCTGAAATTTGCACAGTTACTGAACTAAACATGACCAGTGGACAGTCAGAAGCCCCGCTGGAAACCATCAATCAAACGGACCTGGCGCAACCCACTGGCGCCGGAGACAGTCAAATTGAAATCGCCTCAATTGAGCTGAACAAGTCTAACAAAGCTGGAGAACAAAACCAGATTCAGTCAACAGAAACCCTAGTCAGCTGTGAAGTACCATGTGATCTCAACTTAGGCGAGCAAAATGTGCAGCAGAGCAATCTTGCCTTGAGCCAAAGTGTTCCCGAGCAAGAGAAAACTTCTGCCCCGACTGAAAAGAGTGACATCAAATCTGCTGAGGCTTTCAAGGATAATGCCAAGCATTCTGTGACCATGCTAGGttttaccGATCTGAAAGCGTCTGTTGAGCTCCGCAACATCGACGGCAGCATATTCAAACCAATCAACGACCCAGAATTAGCTAAAACCTTGGGAATTGAGGTTGCGCAGAATTTGTACAAAGTCAACGTTGACGAAATCAATCAGCTGCTGGCCTACCACGAGGTGTTCGGGAAACTGCAGACTGATATCACGATTGCACCCTCAAGCTCCGCCACATCCACCCTAGTCAACAACACCAACTCCATCCAGATCATGCCTCCTCCTTCAAAGTCTTCAGACCTTGACCAACTCGGAAGTGCCCATTCGTGTGAACTGTGCggcaaaatgttttcttacCGTTATCAGCTCATTGTCCACAGAAGGTACCATACAGAGAAGAAGCCGTTCACTTGCCAGGTTTGTGGCAAGGCCTTCAACAGCAACAACGAGTTAAGCAGGCACGGAAAGTGCCACCTCGGAGGCAGTCTGTACACTTGCAGCATTTGCTTTCACGTTTTTGCTAACGCGAGTGGCCTGGAGAGACACCAAAAGCGTCACTCTGGGGATAAACCCTACCTATGCGGAACGTGCGGCAAGTCTTTTGCCAGGAAGGAGCACCTGGAGAACCACAACCGCTGCCACACGGGCGAAACGCCGTATCGTTGCCAGTTTTGTGCCAAAACTTTCACCCGTAAGGAACACATGGTGAACCATGTTCGTAAGCACACCGGTGACACCCCTCATCGCTGCGACATCTGCAAAAAGTCTTTCACAAGAAAGGAGCACTTCACAAACCACGTCATGTGGCACACCGGCGAGACTCCGCACGCTTGCCACGTGTGTGGGAAGAAGTACACGCGCAAGGAGCACTTGAACAACCACATGAGGAGCCACACCAATGACACTCCATTTCGTTGTCAGATCTGCGGCAAATCTTTCACCAGAAAGGAGCATTTCACGAATCACATCATGTGGCACACAGGAGAAACACCTCATAGgtGCGATTTTTGCTCGAAGACATTTACTAGAAAGGAACACCTGCTGAACCATGTGAGGCAACACACAGGAGAATCTCCACACCGATGCAGCTTCTGCTCCAAGTCTTTCACAAGGAAAGAACATCTAGTGAACCACATTCGGCAGCACACAGGCGAAACGCCATTTCGCTGCCAATTCTGTCCTAAAGCCTTCACCAGGAAAGACCACCTAGTCAACCACGTGAGGCAGCATACTGGCGAATCGCCTCACAAATGCCAGTACTGCACCAAAACATTCACTAGAAAGGAGCACCTGACCAACCACATCAGGCAGCACACTGGCGAGTCTCCTCACAGATGTCAGTTCTGCTCGAAAACGTTCACAAGAAAGGAACACCTAGTGAATCACGTCCGAATACACACTGGGGAGTCGCCGCATCGCTGTGACTTCTGCAACAAAACCTTCACAAGAAAGGAGCACTTGACCAACCATCTGAGGCAGCACACAGGAGAGACGCCCCACTGCTGCAACGTCTGCTCCAAACCTTTCACAAGGAAAGAGCACCTCTTAAACCACATGAGGTGTCACACAGGTGAGCGTCCTTTTGCGTGCACTGAGTGCGGAAAGTCTTTCCCGCTGAAAGGCAATTTGCTTTTCCACCAGCGCTCGCATCAGAAGGAACGACCATTCAGTTGCGATGTTTGCGGAAAGGATTTCATGTGCAAGGGACACTTGGTCAGTCACAAGCGAAGTCACGACTCAGAAAAGAACTTTGTCTGCGGTACATGTGGCAAGTCATTTGTGGAGAAGACAAACATGCTGCGGCACATGAAGAAGCACGGTGAAAACGCTGCTGAGTCTGCAAACCAGtcgcagcaacaacagcaacagccAGAAGAAACAGCTCCACTGGCAAACGCGATGGTGCCGATTTTGCCACCAAATGTGCCGGTTGTTGCGGCCACCTTTTAA
Protein Sequence
MQESSQETVTEPDNGAKTTTNEAQAGSSSTGIPSLAKYWVVTNFFQGPSSPYSLPSKSDKEAEICTVTELNMTSGQSEAPLETINQTDLAQPTGAGDSQIEIASIELNKSNKAGEQNQIQSTETLVSCEVPCDLNLGEQNVQQSNLALSQSVPEQEKTSAPTEKSDIKSAEAFKDNAKHSVTMLGFTDLKASVELRNIDGSIFKPINDPELAKTLGIEVAQNLYKVNVDEINQLLAYHEVFGKLQTDITIAPSSSATSTLVNNTNSIQIMPPPSKSSDLDQLGSAHSCELCGKMFSYRYQLIVHRRYHTEKKPFTCQVCGKAFNSNNELSRHGKCHLGGSLYTCSICFHVFANASGLERHQKRHSGDKPYLCGTCGKSFARKEHLENHNRCHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGDTPHRCDICKKSFTRKEHFTNHVMWHTGETPHACHVCGKKYTRKEHLNNHMRSHTNDTPFRCQICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCSKSFTRKEHLVNHIRQHTGETPFRCQFCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKTFTRKEHLTNHIRQHTGESPHRCQFCSKTFTRKEHLVNHVRIHTGESPHRCDFCNKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLLNHMRCHTGERPFACTECGKSFPLKGNLLFHQRSHQKERPFSCDVCGKDFMCKGHLVSHKRSHDSEKNFVCGTCGKSFVEKTNMLRHMKKHGENAAESANQSQQQQQQPEETAPLANAMVPILPPNVPVVAATF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01046510;
90% Identity
-
80% Identity
-