Ntri012463.2
Basic Information
- Insect
- Neocloeon triangulifer
- Gene Symbol
- Rfx2_1
- Assembly
- GCA_031216515.1
- Location
- JASKYO010000014.1:1667234-1673076[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.3e-37 2.4e-33 114.5 0.0 3 78 288 363 286 364 0.97 2 3 1.8 9.7e+03 -2.9 0.0 43 53 679 689 666 712 0.81 3 3 3 1.6e+04 -3.9 0.0 40 54 706 722 691 725 0.65
Sequence Information
- Coding Sequence
- ATGGCCCAACAGTCGGGGGCCACCTCGCCGCCGCCCATCTTCCTGCATCAGGGCGAGGGCGGCGAACTGCACGAGGTGGCGGCCGTGGTGATGGACGGCGACCAAGTGGTCACCGTGGTGCCCCAGCAGCAACAAGTGGCCACCCAGACTGTTTTGGAAGAGGCCGCGGTAGACGGAATCGACAACTCGCCCCGACAGGTCACAGCCCAGGTCGTGGTCAGCAGTGCTCCTCAAACAGTGTCGGTGGTCCCGGTGAGCTCCTCCTTGTCCTCTTCGCCCGTTTCCGGCTCATCTTCGCCGACGGCCGTGGAACCCACGGCCACGCAGCAGTTCATCGCCGTCACAGACTCGGAGCGGTCTTACGCCTCTCTGACCCCCGTTAACCCTGCTGtaGAATCTGGCGGTGTCCAGGTCGTCACAGGGGACACCGTGGCGCACTCAACTTATGTGCAATATGTGGACGAAACACCTGAGGCGGCCACAATTTATACAACCACCAATGGccaaatGGCCTATCCTGTGTACACTATGGGAGAGACTACTGCAACCATGTATACTCCTGCTGCTTCAGGACAATATTATAGCAATCAAGGATCAGCCAGCTACGGCCAAGGGCAAGCGCAGCTTTTGGCACAGACACCCAACACTGCCACTTACATTTTGCAGCAAGGTGTTGATGCCAGTGAAGCCCATGCTCTAATTTCAAACAGGGCCAGTCCTCCAACCGTCAGTGCTCAGGAGGTGACAGGTTACATGGTGCCTACTGAGGTAACCAGTAACAACAGCAATGAAAACCTAGACGAAGGTGGCTCTGATTCTGGTGGACATAATTCTCTGAGCCATGCCACTCGCATTTCTCCAGCGACTGTTCAGTGGCTTGTGGACAACTACGAAACAGCTGACGGTGTCAGTTTACCTCGATCTAATTTGTACCACCATTACCTTCGTCACTGCACAGAACACAAATTAGATCCAGTCAATGCAGCTTCATTTGGCAAACTTATCCGCTCCGTTTTTATCGGGCTACGCACTAGACGACTTGGAACTAGGGGAAACTCGAAATATCACTACTACGGAATTCGAGTTAAACCAACCTCTTCCCTGGCACAGACCTCTGAACAAGAAGAGACTACTGGTACCTCGAATTGTGGCCGTCAAAACTCTGGAAAACGATTCAAGGCTACAATCAAAGTGAATGACTTTGATGGAACGTCTGGCAACCAAAACACAACTAGCACATCTCCACAAATTTCCCAACACCAGCAGTATTTGGGCGAGGCTTCGACAGCTGTACCAGATTTTCCGAACATTGAAGTTGTCATCCAGCTGCCCGAGCAGTGCACCCTTGAAGACGTTGACACCTTCAGAGCCATGTACCGTGAACACTGTGAAGCGTTTCTGGACGCAGTCACCAATCTGGAATTTAACACCGTAGAAAGCCTGTGGAGAGATTTCTGGCGCagctctgaaaataataatgacgaatgtgaagaagaaaaatacttGGCAAAGAGAAAACTATATGCTTTGTGTGAATGTGAGATGATCCAGGATTTCGTAAAGAAAGTCGATTTTGACTTTTACCAGAATCTAGTCGAAGTGTTGATTCCTGATGTCCTTAGACCCATTCCTAgtTCTTTGACTCAAGCCATAAGAAACTTTGCCAAGGGACTGGAAGGGTGGCTCTCAAGTGCAATGACTGGGTGCCCAGAGAAGATAATGAATATAAAGCTCTGTGCCGTGAGTGCATTTGCTCAGACTTTGCGCCGATACACCTCACTTAACCACCTGGCGCAAGCAGCCCGAGCAGTTCTGCAGAACTCTACGCAGATTAACCAAATGCTAGCGGATCTTAACAGAGTAGATTTCCACAATGTGCAGGAACAGGCTTCTTGGGTTTGCCAATGCGACCCAGACATTGTGCAGCAGCTCGAAGCTGACTTCAAAGAAACTCTGCAGCAGCAGAACTCATTGGAGCAATGGGCCACCTGGCTGAAGAAGGTTGTCGCTACGGTTTTGCAGCCTCACGAAGGCAAAGCTGACTTTGGCAAGGCAGCGAGGCAGTTTCTCCTCAAGTGGTCGTTCTACAGCTCCATGGTGATCCGTGATCTCACCCTTCGCAGTGCTGCTAGCTTTGGATCATTCCACCTGATCAGACTTCTCTATGATGAATATATGTTCTACCTTATTGAGCACCAGGTGGCCCAGGCTACAGGAGAAACTCCGATCGCTGTGATTGGAGAGaaacaATCATCCGAGGACGGGCCGGAGCGTAAAAGAACTCGTCTAATGagctaa
- Protein Sequence
- MAQQSGATSPPPIFLHQGEGGELHEVAAVVMDGDQVVTVVPQQQQVATQTVLEEAAVDGIDNSPRQVTAQVVVSSAPQTVSVVPVSSSLSSSPVSGSSSPTAVEPTATQQFIAVTDSERSYASLTPVNPAVESGGVQVVTGDTVAHSTYVQYVDETPEAATIYTTTNGQMAYPVYTMGETTATMYTPAASGQYYSNQGSASYGQGQAQLLAQTPNTATYILQQGVDASEAHALISNRASPPTVSAQEVTGYMVPTEVTSNNSNENLDEGGSDSGGHNSLSHATRISPATVQWLVDNYETADGVSLPRSNLYHHYLRHCTEHKLDPVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGIRVKPTSSLAQTSEQEETTGTSNCGRQNSGKRFKATIKVNDFDGTSGNQNTTSTSPQISQHQQYLGEASTAVPDFPNIEVVIQLPEQCTLEDVDTFRAMYREHCEAFLDAVTNLEFNTVESLWRDFWRSSENNNDECEEEKYLAKRKLYALCECEMIQDFVKKVDFDFYQNLVEVLIPDVLRPIPSSLTQAIRNFAKGLEGWLSSAMTGCPEKIMNIKLCAVSAFAQTLRRYTSLNHLAQAARAVLQNSTQINQMLADLNRVDFHNVQEQASWVCQCDPDIVQQLEADFKETLQQQNSLEQWATWLKKVVATVLQPHEGKADFGKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAQATGETPIAVIGEKQSSEDGPERKRTRLMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -