Nasi009937.1
Basic Information
- Insect
- Neoceratitis asiatica
- Gene Symbol
- -
- Assembly
- GCA_030068015.2
- Location
- CM061527.1:13267063-13267970[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3 1.6e+03 -0.4 0.6 53 67 8 22 5 25 0.76 2 3 9.9 1.2e+04 -3.3 0.1 9 18 127 136 127 144 0.64 3 3 7.4e-17 9.3e-14 51.6 6.4 4 69 174 239 171 240 0.96
Sequence Information
- Coding Sequence
- ATGGACTCACCCGAACCGGTTAAGACGCATTATGTACGTTGTTTGAAATGCGACAAAATTCTCGAATGCTCACGCTACGACACCAACGCTCTACTTGAACACATCCGTACCGATCAtcctgaaattgaaattgttgaaaacggCATGCCACGTAACGGTCAAACTAAAATGCGTGAAGCGGCTGGTAACATAGTTGTACCGCATGACACAATCAACACCAACGATAAGAATTCCACGATGTTTGACCGTGGCGCTGGCCAACGAAATGAGGAGTATAAAGATTTTCAGCCACCTTCGACGTCCTCACGCGAACGTCTACACATACGTTCCCATCgagGTCTCTTTAAAATCCCAGTCGATGGCTCGCAACGTGACTTGCCCAACTGTGAACAAAGCAATGGCACCAGCGCTGTCTACACACGTCGCTACCAAGTGCATACACCTAGCTCGCCGGCATACGATGAGAAACCTAGTCGCAGCCTCTACCGCACTTCCATTGAAAAGTGGCGTCCGGCCAATGGCACCATCTACTGTCCGAAATGTGGCCTCAATCGTCGTCCACTTATACGTACGCAGACCGAACGCAGTTCCAATAGTTCTTGTTGCGCTGCCTGCATACTTGGCTGTTGGCCCTTCTGCTTCCTGCCCTTCCTGCTGCCAAACGACAATAAAGAGTATCTTCATTGCTCAAATTGCAAGACCTTTTTGGGTTTGTATGATCGTGCTAATAATTGTGTCAGACCGAATCGGGAGTATTGTCAAACGGATGAGACAGTAATAAAAGAGACGGATATGCGTATAGAGGATGATGATGGTAAGGACAAGCGGAATTGTCGTTGCGCTTGA
- Protein Sequence
- MDSPEPVKTHYVRCLKCDKILECSRYDTNALLEHIRTDHPEIEIVENGMPRNGQTKMREAAGNIVVPHDTINTNDKNSTMFDRGAGQRNEEYKDFQPPSTSSRERLHIRSHRGLFKIPVDGSQRDLPNCEQSNGTSAVYTRRYQVHTPSSPAYDEKPSRSLYRTSIEKWRPANGTIYCPKCGLNRRPLIRTQTERSSNSSCCAACILGCWPFCFLPFLLPNDNKEYLHCSNCKTFLGLYDRANNCVRPNREYCQTDETVIKETDMRIEDDDGKDKRNCRCA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304207;
- 90% Identity
- -
- 80% Identity
- -