Nasi000861.1
Basic Information
- Insect
- Neoceratitis asiatica
- Gene Symbol
- -
- Assembly
- GCA_030068015.2
- Location
- CM061524.1:28138231-28142227[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0013 0.087 13.6 1.3 2 23 102 124 102 124 0.95 2 18 2.5 1.7e+02 3.2 2.8 2 23 173 195 172 195 0.92 3 18 6.3e-05 0.0043 17.7 0.8 2 23 210 232 209 232 0.94 4 18 0.0011 0.079 13.7 0.0 1 20 242 261 242 262 0.95 5 18 2.5 1.7e+02 3.2 0.8 1 12 292 303 292 308 0.84 6 18 0.0038 0.26 12.0 2.1 1 21 329 349 329 350 0.96 7 18 2.5 1.8e+02 3.2 4.2 1 23 394 417 394 417 0.94 8 18 3.2 2.2e+02 2.8 1.0 1 13 469 481 469 484 0.85 9 18 1.8e-06 0.00013 22.5 0.9 3 23 519 540 517 540 0.96 10 18 0.25 17 6.3 3.7 1 19 596 614 596 616 0.94 11 18 0.012 0.81 10.5 1.9 2 23 644 666 644 666 0.95 12 18 5.9 4e+02 2.0 0.1 3 23 776 797 775 797 0.89 13 18 0.7 48 4.9 1.8 1 17 842 858 842 860 0.78 14 18 0.00015 0.01 16.5 0.1 1 23 1097 1120 1097 1120 0.97 15 18 0.13 9.2 7.2 2.3 1 23 1167 1190 1167 1190 0.97 16 18 0.0075 0.51 11.1 1.6 1 23 1196 1219 1196 1219 0.97 17 18 0.00048 0.033 14.9 0.4 3 23 1229 1249 1228 1249 0.98 18 18 0.0044 0.3 11.9 0.4 1 23 1256 1279 1256 1279 0.95
Sequence Information
- Coding Sequence
- ATGGAAGAGGACTCAAATTCTAAGCATCTTGATATATCTCTTGGAGAATTATCCTCTGAGTTACCTGCTGATAACACCGAGGATGATAATGAGGTAACAATAGAAGAAAGCGAAAACGATTCCAATGAAGATGATGGTGACGATAATGATGATGGGTGTCAGGATACCGACTCTGAAAGCAGTTATCATTTTGTATACCAACCTGAAGTACATAGTACATGCCAGATTTTACCCAAagtaaatgcaaagaaaaatgcCCACTCAAGAAATTCAAATCACATTTATGGCCAATATGTTACGCGCCAGTGTCCTATGTGCGATTTTGAGTTTAGCTCAGCTTATTGCTGGAAAAAACATATTAACTTCGTACACAAATTGGCAAAGCCAGAAGACTTACAATTCAAGTATAATGAGGCTGGTGCCAAGTGCAAGTCGTGTGATTTTCAAACAGCATCACCCGATTTCAACAAACTACTCGATCATCAGATTTTACACATGCCCTTCAgtcaatttttgaaatgtaaattatGCGATTGGAGAACTAAAACACACCCCAGCATGAATTTCCATTTACGTCAGCAACATTCAGATAAAATGGACATTACTAAACAAAGTATAGAGTTAACCGTATGTCCATATTGCCAGGAAGAATTTTCATCACATTGGTATTTGCGTAAACATATGATACAGGAACATGAAAAGACCGTTGACGATAGaacatgttttatttgcttGGAATGTGGCGAAGAATTTTCGTCAAATGTTAGTCTGCGGGCACATGTATTTGAAAAGTTTGCTGACAAAACTGTAGACGAACTTGGCTTTGAAGAAGTAACAAACGAATATGACGACGATGATGATGGAGATGTTAGTTACAAATGTACCCAATGCTCAatagtttttcataaaaacaacaGTCGAACTTTTGCAAATATACGTGAGCATTACATGTTGCATTTAGGCGAGCCCACGGGCAAACACGCATATAAATGCAGATATTGTGAGGAAACTTTCCGCAGATTTGATGATATACGCACACATATTTGTGAGGGCCTAAGCAAAATAGTGCAAAATGATACACAGACAAAAAATAATCGAAGTCGGGAAAACAAGTTGGAAAAGGcCATAACATCACAAGAATCCATTGAGCGTAAAAgagattatatgaaaaatatacgtCATGTCTGTTTGAAATGTGGAAGCACATATGGTAAGTTGTCGCAATGCAAAAAGCATATGATGGCCAAGCATGGTATGAACAAACCAACCGGAttggattttaaaaaaatcgagaGTAACAATGTAACCGACACATACGAATGCGCGATTTGCGAAGAATTCACGTGCGTGCTGGACTTAAGTTCCATGTTAATGCATGCGCGCATACATAACGTTTATGATCCTTTTCAATGTAAATTATGCAAAACGTTCTTTGCTTTCGAGCATAATATACCCGGTCATGATTGTGTTGAAGTGGATTGTGTAGAAACAACAACGCCACTAAATGAAAGGAGATACCCCAGAGAAATACCCATACCGAATATGGATAtattttgtcccaaatgtgaccAAACATATACAAAGCCTTCATCCTTAACGAGACATATGAATCGAATGCATGGTATGAATGAACCTTACGGGCTCGGCTTTGTTGCGTGCGAAACGAACGATGATGAAAGCACCGAGAATGCATATCACTGTGTTGaatgtgaaaatttcataattaccgaaaaaaatttgagatcTATGTTGGAGCATGCAAGGCAACATTTGCCCTATGAAAGTTTTCAATGCACTCTCTGCAAAGAGAAATTTCGATTTAAAGAGCAAGCGAAACAACATGAATGTCCAATCGATGATGTAACAACTGTGCCGGATAGGTACAATCTGAAAATTTTGAACACACGTTTACATATTAAAATGGGTCGCGTATGTCCGAAATGTgataaaatgtttgtaaaatcaACTGCGTGTAAAGTACATTTAAACCGAATGCATGGTATGAATAAACCTGCTGGACTCGGATTTAAGCCCGTCACCAGCGATGATGATCAAAACAAAACAGTTTACCGTTGTTTGCAGTGCAACGACTTTCATATGGAAAAACTGGACTTAACAGTTATGACCGAGCATGCCAGAGAGCATTTTCAATATAACAGTTTTTGGTGTATATTATGCGATGaacaatttaaattcaaaacacaAGCAATATCGCATAAATGCCTAAATGATCCCAATAGAATTGATGAAGATGATGAAGctcaagttgaaaataaaacatttacgaaatatcccaaaaactTTGAGAAAATCATAAAGAAATTTTGTCCAGAATGTGACATTGAAATGCCGACAATAAAAGCATTTCGTTGGCATTTGGGTAAATACCATGAAATGAACACGCTGGAAGGGATGcaaatgaaacaaacaaaaggTGATTTAGTTGAGTGTCTAATTTGCAAAGTACAAACAACATACATGCGACGTTACGACCACAGATTCCTACACTTACCTTTTAAACCTTACCAATGCGACTATTGTAAgaagtattttattgaattagaaAAGGCCAAGTCTCATTGCGGTGAGTGTGTACGGGTACCAAAGAAATTCGAGGAAACTAAAGAAGTGAAAAAGGCGCAGCAAGCAAACAAGCGTTTGGCAGTGGCAGTGCCTACGAAAAACCCAATTGatggtaaaaaacaaaaaatacaaaaaaagagtCAACAATCCGGCAGAGATGGGCAAGATTTAGAGAGCGAAAATGACAACTCGAATAAAACAATATCCGTTGTACTTGCAGATGATAGTGATTTTTCGAAGTTTGTTAAAATAACCTGCCCATTTTGTACAGATACCGAATTCGATTCTCATCTCATTCTAATACGTCATTTTAACGAAAAACATAACAATTTTAGCGAACACTTTACTATACATCCAACAAATTCGGCAAATTGCAAaacatgtaataaatatttcaatatcatttaCAAAAAGACTATGGTAAAGCATTATCTTAGCGAAATTGAAGCCAAATGCTTCTTCTGTCGCCTTTGCGATAAGAAGAgtttatattttgaaagaatGCGCACACATTTGCTGGATGGTCATGGTGCTGTTATTGCTGGTCAATCAATGCAAGAGCAAAATAACTCCAACAGTGTTACAGATGTTGTAACAGATCCCTTAAAAATGACCGCTGTAGATATATCAAAAGTATCGCGTACCACAATGGCTATTCCCACTAATAAAACAGCGGTCTTCAATGAATTTAATGCATACATTTCATATGCATGCCCCGAGTGTAACGAACCGTTCGTATCGTCGGAGCAATGGCATTTACACATCAATACTGCACACAGTTTCTTTGAACAAAATCATTTGAACATCGAAGCCACACCGGATGGTCACAAACGTTGCCTACAGTGTAGTGTGAACATCAGTGGTGGCATATTGGCGGAACAGCGACACAAGTTGACACATATGGAATTCAAATCGTTCATTTGCACACTCTGTCAACATCGTTCAAACACTTTGGGTGTACTCACACAACATTTACGCAGACGTCACTTTGCTAAGGGTACCTTCAAGTGTCCCATGTGCACAAAAGTGCTCAGTACGTCATGTGAACAAAGCGAGCACATTAAAAGTGAACACGATCCCAGTGAATATCCGGCAAAATTATGTcgcatttgtttgaaaatgtttACGTCTGCCAAATCATTGAATATTCATATGGATGTGCATGATCCGAATAGAAAAGTTTTCCCATGCGATTATTGCGAACGTAGTTATATGTATAGAAGGGAATTGGTTTTACATGTGCGCGCTAAACATCCCAAAGAAGCGAAAGGTGGTAATAATTAG
- Protein Sequence
- MEEDSNSKHLDISLGELSSELPADNTEDDNEVTIEESENDSNEDDGDDNDDGCQDTDSESSYHFVYQPEVHSTCQILPKVNAKKNAHSRNSNHIYGQYVTRQCPMCDFEFSSAYCWKKHINFVHKLAKPEDLQFKYNEAGAKCKSCDFQTASPDFNKLLDHQILHMPFSQFLKCKLCDWRTKTHPSMNFHLRQQHSDKMDITKQSIELTVCPYCQEEFSSHWYLRKHMIQEHEKTVDDRTCFICLECGEEFSSNVSLRAHVFEKFADKTVDELGFEEVTNEYDDDDDGDVSYKCTQCSIVFHKNNSRTFANIREHYMLHLGEPTGKHAYKCRYCEETFRRFDDIRTHICEGLSKIVQNDTQTKNNRSRENKLEKAITSQESIERKRDYMKNIRHVCLKCGSTYGKLSQCKKHMMAKHGMNKPTGLDFKKIESNNVTDTYECAICEEFTCVLDLSSMLMHARIHNVYDPFQCKLCKTFFAFEHNIPGHDCVEVDCVETTTPLNERRYPREIPIPNMDIFCPKCDQTYTKPSSLTRHMNRMHGMNEPYGLGFVACETNDDESTENAYHCVECENFIITEKNLRSMLEHARQHLPYESFQCTLCKEKFRFKEQAKQHECPIDDVTTVPDRYNLKILNTRLHIKMGRVCPKCDKMFVKSTACKVHLNRMHGMNKPAGLGFKPVTSDDDQNKTVYRCLQCNDFHMEKLDLTVMTEHAREHFQYNSFWCILCDEQFKFKTQAISHKCLNDPNRIDEDDEAQVENKTFTKYPKNFEKIIKKFCPECDIEMPTIKAFRWHLGKYHEMNTLEGMQMKQTKGDLVECLICKVQTTYMRRYDHRFLHLPFKPYQCDYCKKYFIELEKAKSHCGECVRVPKKFEETKEVKKAQQANKRLAVAVPTKNPIDGKKQKIQKKSQQSGRDGQDLESENDNSNKTISVVLADDSDFSKFVKITCPFCTDTEFDSHLILIRHFNEKHNNFSEHFTIHPTNSANCKTCNKYFNIIYKKTMVKHYLSEIEAKCFFCRLCDKKSLYFERMRTHLLDGHGAVIAGQSMQEQNNSNSVTDVVTDPLKMTAVDISKVSRTTMAIPTNKTAVFNEFNAYISYACPECNEPFVSSEQWHLHINTAHSFFEQNHLNIEATPDGHKRCLQCSVNISGGILAEQRHKLTHMEFKSFICTLCQHRSNTLGVLTQHLRRRHFAKGTFKCPMCTKVLSTSCEQSEHIKSEHDPSEYPAKLCRICLKMFTSAKSLNIHMDVHDPNRKVFPCDYCERSYMYRRELVLHVRAKHPKEAKGGNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304137;
- 90% Identity
- -
- 80% Identity
- -