Ccap007696.1
Basic Information
- Insect
- Ceratitis capitata
- Gene Symbol
- -
- Assembly
- GCA_000347755.4
- Location
- NW:244436-249513[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00023 0.012 15.5 0.7 2 23 108 130 108 130 0.97 2 19 9.4 4.8e+02 1.0 1.2 2 23 179 201 178 201 0.78 3 19 6.9e-05 0.0035 17.2 0.7 3 23 217 238 215 238 0.94 4 19 0.041 2.1 8.5 0.0 1 19 248 266 248 268 0.92 5 19 3.1 1.6e+02 2.5 0.5 1 14 295 308 295 311 0.87 6 19 0.0028 0.14 12.1 1.8 1 20 332 351 332 353 0.95 7 19 2 1e+02 3.2 4.2 1 23 397 420 397 420 0.94 8 19 0.82 42 4.4 0.7 1 15 472 486 472 487 0.87 9 19 2e-06 0.0001 22.0 1.3 3 23 521 542 519 542 0.96 10 19 0.091 4.6 7.4 3.1 1 19 597 615 597 617 0.95 11 19 0.21 11 6.2 0.7 3 19 646 662 645 667 0.74 12 19 4.6 2.3e+02 2.0 0.1 3 23 777 798 776 798 0.89 13 19 5.3 2.7e+02 1.8 0.6 1 15 843 857 843 861 0.77 14 19 8.5 4.3e+02 1.2 0.5 2 23 948 971 947 971 0.88 15 19 5.9e-05 0.003 17.4 0.1 1 23 1099 1122 1099 1122 0.98 16 19 0.1 5.3 7.2 2.3 1 23 1169 1192 1169 1192 0.97 17 19 0.0069 0.35 10.9 1.8 1 23 1198 1221 1198 1221 0.97 18 19 0.005 0.26 11.3 0.6 3 23 1231 1251 1230 1251 0.97 19 19 0.003 0.15 12.0 0.3 1 23 1258 1281 1258 1281 0.95
Sequence Information
- Coding Sequence
- ATGGAAGATGAAACAAATTCAATGCCTCTTGCTATATCTCTTGAAGAGGTATCCTCTGAATTACCCACTGATAATAACGTTAATGATAAGGCGGTAACAATAGAAGCAAATGAAAGCGACAACGAATCCAACGAAAGTGATTGTGACGATAGTTATGAAAATAATGATGATAAGTATCAGGATACAGACTCAGAGAGCAGTTACCATTTTGAATATGCACCTGAAGTAGACAACTCATGCCTGGTTTTACCCAAGTTAGATTCCAAGAAAAATTCCTACATAAGAAATGCGAATCACATGTATGGCAAATATGTTACACGCCAGTGTCCGATGTGTGATTTTGAGTTTAGTTCAGcttattgttggaaaaaacatattaatatcgTACACAATTTGGCGAAACCAGAAGACTTAAAGTTCAAATATAATGAGGTAGGCGCTAAATGTAAGTCGTGTGATTTTCAAACATCATCACCAGACTTCAACAAGTTACTCGATCATCAAATTTTACATATGCCCTTCAgtcaatttttgaaatgtaaattatGCGATTGGAGAACTACAGCTCATCCTAGCATGAATTTCCACTTACGTCAGCAGCATTCAGACAAAATGGATATCAGTAAAAAAAGTATAGAGTTAACCATATGCCCATATTGTCAGGAAGAATTTTCGTCTCATTGGTATTTACGTAAACATATGATACAGGAACATGAAAGGACTATAAACGATAGGACATGTTTTATTTGCTTGGATTGTGGCGAAGAATTTTCCTCAAATACTATTTTACGGGCTCacgtttttgaaaagtttgctGATAAAACTGTAGGCGAACTTGGCTTTCAGGAAGTAACAAACAAAGAAGATAATAATAAAGTCACTTACAAATGTACCCAATGTTTAGCAGTTTTTCGCAAAAGTACAAGTAGAACGTTTGCCAATATACGCGAACATTATATGTTACATTTAGGCGAACCAACTGGCAAACACGCCTACAAATGCCGATATTGCGAAGAAACATTTCGTAGATTTGATAATATACGCGTACATGTTTGTGAAGAATTACGCAAAATGCTGCAGAACGACCCGCAGGCAAAGATTAATCGAAGTCTAGAAAATAAGTTAGAAAAACatATTATACCGCAAGAACCTATTGAACGCAAAAGagattatatgaaatatatacgtCATGTCTGCTTGAAATGTGGAAGCACATATGGCAAGTTGTCGCAATGCAAAAAGCATATGATGGCGAAACATGGTATGAACAAACCAACGGGCTTGGATTTTAAAAAGATCGAAAGTAACAATGTGACCGATACATACGAATGTGCGATATGCGAAGAGTTCACATGTGTACTTGACTTGAGTTCGATGTTAATGCATGCGCGTATACATAACGTTTATGATCCTTTCCAATGTAAATTATGCAATACGTTTTTTGCCTACGAGCATAATATACCTGGTCATGAATGTGTTGAAGTAGATTATATGGACACAACACCAATAAATGAAACTAGATATCCAAGAGAAGCGCCCATACCGAATATGGATACTTTTTGTCCCAAATGTGATCAAACATATACAAAGCCTTCTTCCTTAACGAGACATATGAATCGAATGCATGGTATGAATGAACCTTACGGTCTCGGCTTTGTGCAGTGCGAGCAAGGCGATGAAAGCACTGAAAACGCATATCGCTGTTATGAAtgcgaaaattttataattaccgAGAAGAATTTGAGAGCTATGTTGGATCATGCAAGGCAACATTTACCCTACGAAAGTTTTCAATGTACTCTCTGTAAGGAGAAGTTTCGCATGAAAGAGCAAGCGAAAAAACATGAATGTCCAATCGATGATGCAGCTACTGTGCCTGATAAGTacaacttgaaaattttaaacacacgTTTGCATAATAAAATGGGACGTATATGTCCGAAATGtgacaaaaaatttgtaaaatctgTTCGTAGTAGAGTACATGTAACTAAAATGCATGGTATGGATAAACCTGCTGGACTTGGATTTAAAACCATTAACAGCGATAATGGTAATAACAAAGTACTATATCAATGTATGCAGTGTAACGACTTTTATATGGAGAAGCTGGACTTCACAATTATGGCCGAGCATGCTCGAgaacattttcaatataatagTTTTTGGTGTATAATGTGCGACGAACAATTTAGATTCAAAGTACAAGCAGTAGCgcataaatgtttaaatgatCCCAATAGAGTTGAAGAAGATAATGAAGctgaagttgaaaataaaacatttacaaaatacCCCAAAAACtttgagaaaattataaagaaattttgtccAGAATGTGACATTGAAATGCCCACAATAAAAGCCTTTCGTTGGCATTTGGGTAAATATCACGAAATGAACACGATGGAGGGGTTGCAAATGAAGCAAACAAAGGGTGATTTAGTAGAGTGTCTAATTTGCAAAGTACAAACTACACATATGCGACGTTACGATCACAGATTCCTACACTTACCTTTTAAACCTTACCAGTGTGAATTTTGTAAGGAATACTTTATTGAATTAGAAAAGGCTAAGTCTCATTGCGTAGAATGTGATCTGGTGCCAAAGAGATTTGAGGAAAgtaaagaagtgaaaaaacCGCAACAAGCTAAGAAGCGTACGGCTTTGTCTACGGAatatactactactactactacggctaaaaaatcaaaaaaaggggaaaagatTCCACAATTTGGCAGTGATGGGCAAGATTCAGCGAGCGAAAatgaaaactcaaataaaacgaTTTCTGTAGTACTGGCTGATGATaatgatttttcgaaatttgttaaaataacttGCCCATTTTGTCCGGATACCGAATTCGAATCCCACCTCAAGCTAATACGCCACTTTAACGAAATACATAACAATTTTAGCGAACACTTTACTATACATCCAACCAATTCGGCAAATTGCAAaacatgcaataaatattttaatataatttacaaaaagactATGGTAAAACATTATCTTAGCGAAATTGAAGCGAAATGCTTCTTCTGTCGTCTTTGCGACAAGAAGAGcttatattttgaaagaatGCGCACACATTTGTTGGATGGTCATAAAGCTGTTATAGCTGGTCAATCAAGCCAAGAGCAAAATAGCGCGAACAATGGGACAGATGTCGAAACAGACCCGCTGAAAATGACCGCTGTAGATATATCAAAGGTATCGCGTACCACAATGGCTATACCCACAAATAAAACAGcggtttttaatgaatttaacgCCTACATTTCATATTCATGCCCCGAGTGTAACGAACCATTCGTATCGTCGGAACAATGGCATTTACACATCAATACTGCGCACAGTTTCTTTGAGCAAAATCAATTGAACATCGAAGCCACACCGGATGGACATAAACGTTGCAAACAGTGTAGTGTCAATATATCCGGTGGCATATTGGCGGAACAGCGACACAAGTTGACGCATATGGAATTTAAATCATTCATTTGCACACTCTGCCAACATCGTTCAAACACTTTGGGTGTACTCACGCAACATTTACGCAGGCGTCACTTTGCTAAGGGTACCTTCAAGTGTCCCATGTGCACAAAAGTGCTCAGTACGTCATGTGAACGAAGTGAACATATTAAGAGCGAACATGATCCCAGTGAATATCCTGAAAAATTATGTCGCGTTTGCTTGAAATTGTTTACATCTAACAAGTCATTGAATATTCACATGGACGTGCATGATCCCAATCGAAAAGTTTTCCCATGCGACTATTGCGAACGCAGTTATATGTACAATAGGGAATTGGTTCTACATGTACGCGCTAAACATCCCAAAGAAGCGAAAGCGAAgtga
- Protein Sequence
- MEDETNSMPLAISLEEVSSELPTDNNVNDKAVTIEANESDNESNESDCDDSYENNDDKYQDTDSESSYHFEYAPEVDNSCLVLPKLDSKKNSYIRNANHMYGKYVTRQCPMCDFEFSSAYCWKKHINIVHNLAKPEDLKFKYNEVGAKCKSCDFQTSSPDFNKLLDHQILHMPFSQFLKCKLCDWRTTAHPSMNFHLRQQHSDKMDISKKSIELTICPYCQEEFSSHWYLRKHMIQEHERTINDRTCFICLDCGEEFSSNTILRAHVFEKFADKTVGELGFQEVTNKEDNNKVTYKCTQCLAVFRKSTSRTFANIREHYMLHLGEPTGKHAYKCRYCEETFRRFDNIRVHVCEELRKMLQNDPQAKINRSLENKLEKHIIPQEPIERKRDYMKYIRHVCLKCGSTYGKLSQCKKHMMAKHGMNKPTGLDFKKIESNNVTDTYECAICEEFTCVLDLSSMLMHARIHNVYDPFQCKLCNTFFAYEHNIPGHECVEVDYMDTTPINETRYPREAPIPNMDTFCPKCDQTYTKPSSLTRHMNRMHGMNEPYGLGFVQCEQGDESTENAYRCYECENFIITEKNLRAMLDHARQHLPYESFQCTLCKEKFRMKEQAKKHECPIDDAATVPDKYNLKILNTRLHNKMGRICPKCDKKFVKSVRSRVHVTKMHGMDKPAGLGFKTINSDNGNNKVLYQCMQCNDFYMEKLDFTIMAEHAREHFQYNSFWCIMCDEQFRFKVQAVAHKCLNDPNRVEEDNEAEVENKTFTKYPKNFEKIIKKFCPECDIEMPTIKAFRWHLGKYHEMNTMEGLQMKQTKGDLVECLICKVQTTHMRRYDHRFLHLPFKPYQCEFCKEYFIELEKAKSHCVECDLVPKRFEESKEVKKPQQAKKRTALSTEYTTTTTTAKKSKKGEKIPQFGSDGQDSASENENSNKTISVVLADDNDFSKFVKITCPFCPDTEFESHLKLIRHFNEIHNNFSEHFTIHPTNSANCKTCNKYFNIIYKKTMVKHYLSEIEAKCFFCRLCDKKSLYFERMRTHLLDGHKAVIAGQSSQEQNSANNGTDVETDPLKMTAVDISKVSRTTMAIPTNKTAVFNEFNAYISYSCPECNEPFVSSEQWHLHINTAHSFFEQNQLNIEATPDGHKRCKQCSVNISGGILAEQRHKLTHMEFKSFICTLCQHRSNTLGVLTQHLRRRHFAKGTFKCPMCTKVLSTSCERSEHIKSEHDPSEYPEKLCRVCLKLFTSNKSLNIHMDVHDPNRKVFPCDYCERSYMYNRELVLHVRAKHPKEAKAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01045809;
- 90% Identity
- -
- 80% Identity
- -