Basic Information

Insect: Neoceratitis asiatica
Gene Symbol: -
Assembly: GCA_030068015.2
Location: CM061527.1:54642895-54650421[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1 69 4.4 0.4 1 23 355 378 355 378 0.93

2 12 8.3e-06 0.00057 20.4 0.9 1 23 392 414 392 414 0.99

3 12 0.016 1.1 10.1 2.7 1 23 421 443 421 443 0.98

4 12 5.9e-06 0.00041 20.9 5.1 1 23 449 471 449 471 0.99

5 12 0.00016 0.011 16.3 3.3 1 23 478 500 478 500 0.98

6 12 2.4e-05 0.0016 19.0 0.5 1 23 506 528 506 528 0.94

7 12 4.9e-05 0.0034 18.0 0.3 1 23 534 556 534 556 0.98

8 12 1e-05 0.0007 20.1 0.6 1 23 562 585 562 585 0.98

9 12 1.7e-05 0.0012 19.4 2.6 1 23 591 614 591 614 0.95

10 12 0.00018 0.012 16.2 1.8 1 23 620 642 620 642 0.97

11 12 0.00034 0.023 15.4 0.9 1 23 648 670 648 670 0.97

12 12 0.0013 0.088 13.6 0.3 1 22 676 697 676 700 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1	69	4.4	0.4	1	23	355	378	355	378	0.93
2	12	8.3e-06	0.00057	20.4	0.9	1	23	392	414	392	414	0.99
3	12	0.016	1.1	10.1	2.7	1	23	421	443	421	443	0.98
4	12	5.9e-06	0.00041	20.9	5.1	1	23	449	471	449	471	0.99
5	12	0.00016	0.011	16.3	3.3	1	23	478	500	478	500	0.98
6	12	2.4e-05	0.0016	19.0	0.5	1	23	506	528	506	528	0.94
7	12	4.9e-05	0.0034	18.0	0.3	1	23	534	556	534	556	0.98
8	12	1e-05	0.0007	20.1	0.6	1	23	562	585	562	585	0.98
9	12	1.7e-05	0.0012	19.4	2.6	1	23	591	614	591	614	0.95
10	12	0.00018	0.012	16.2	1.8	1	23	620	642	620	642	0.97
11	12	0.00034	0.023	15.4	0.9	1	23	648	670	648	670	0.97
12	12	0.0013	0.088	13.6	0.3	1	22	676	697	676	700	0.92

Sequence Information

Coding Sequence: atgacgaGTTTATTATCTTGTGAGGATACCATTCGGCCAAAATTGGATATAAGGTTAAAAGAAGGAAACCTGAAAGGAGAACAATTTATGAACGATGCCAGCGCGTTAGATCCAGAGggatatattataaaaaatgctaaatGCTTTCTTTGTGATCGTAATTTTGTTGAAGGAGAAGGTACGTTTCTTATATTTGAAATTCGTCTGCGTGATGATGGAGGAATCGATAATCCCCTCTCCTTAATAATATCAACGGCTCTAGGCAGAGACTTAGATGAAAATAGCTCACACTCACCTcTACTTTGCGAGTCttgtaacaaaataattttagagtTTGAGAGACTGctacaaaaattttgtgaaaagcgTATGCAAATAATTAAATCGTATAACCGAACAGTTCACAAGTATAACATAGATCCTATTCTCATTGATAGTGAAAGCGAATCAATTCCTGGCGACATTATATGTTTTGATGAATTATCGGAGAATATAATTATTGACGATCtgcattataaatacaaaaacctgAACTCGGACGATTCGCCAAATGAGTTTAAAGGATCAAAAGAAATGGCATCGAATATTTTAGAGAAAAACGAAATAACTTTGGATTCCGTTGGAGCAGATTTAGTGGAAGAAATTATTGATTGCGACACAATCGAAGACGATGGTTCTCTTTTAAATACCGATTTTCAATGCATGCAGAAAAATGAAGATTACAGTGATAAACATTGTAATGAAACTATTTCGGATATTGCCAAAAATGTTGAACCAGGTTTGATTCACTCTGAGTTGTTATCTCATACATTAcagaacaacaaaaatgagGAGACATTAATATATGATCCAGATGATAATAACATTGCttCTCCATCGTTAAATTATACAATTACAGATGAAAATTCAGTGCCAGACGATGAAATGATTATGGATGAACAATTTAAAATGGTTTTTGAACAGGAAGACAACTTATACTTTTGCTTACTTTGTGGAGAGCTAAAGCCACTGACTGCGGAACCATTCGCAGAACATATGATACAGTGTCACGACCTAAAGTTTTATGCCTGTGAACATTGCTCTTCTGGTTTTCTTTCAGTAGAAAGTTTAAAAGAGCATATTGAAAACACGCATGAAAAGCTTTACGTAACCACCGAAACAGACTGTTCGGAATACCAGTGCAATGTATGCCAACAAGTTTTTATTAACCTTCGATTGCTTCGTGTTCATAAACGAACTCATAACAATGCCTCCTTACAATATGAATGCTCTGAATGTTATAAGAAATATAGTTGTCGAAATCTTCTACTTGATCATATGAACGTCCACACAGGCCTCCGCCCATATAAGTGTACAAAGTGCCCCAAAGACTTCACTTCAAAATGTACTTTGCAGACGCATATGAAAATTCATAGTGAACGATTGCGACCTTATAAATGCGATATATGCAATAAAGCATTTCTTAATCAACAAAACCTTAATCATCATAAAAAACTGCACCTGGGAGAAAAGACATTCATTTGTGATATATGCTCAAAAGCCTTTAGTACTCAGCATAATTTAGATGCCCATAAGATTGCACATACCAGTCAGAGACCATTCACGTGCAGAACATGTGGTAAAGCTTTTGCACGGCGTGCTGAAATTAAAGATCACGAGCGCATCCACACTGGAGAGAAACCTTATAAATGCGATATGTGTGAGGCTGCATTCGCGCAACGTTCTAATTTGATGACGCATCGGAAGTCTAcccatttaaatgaaaaattgcacAAGTGCGATCAATGTGATCGTTCATTCAAAAGACGTCGATTATTACAGTATCATATCAATGCGGTGCATACAGGTGTGCGCCCTCACGAATGTGAAATATGTGGTTCATCATTTGTGTATCCTGAACATAAAAAGAAGCATATGCTTATACATGGAAATACCAAGCCATACATATGTGAAGTATGTGGCAAAGAATTCAATAGTTGTGCCAATCGAAATGCTCATCGCTATGTGCATAGCACCAAAAAACCATATGAATGTCTCAAATGTGGTGCTGGGTTTATGCGTAAGCCATTGCTATTGGCGCATATGAAACATTCAGGACATACAAACGACACTATTATAATAAATCAGCCACATATTAGTGGTAAGGGAATGTTGACTTTGGAAAGCGAGATGAGCACGATTGATTCCAGCGATGATATAAGTGAAGTTGCTGTTAATTCGTCACAAGAATCAAATTCAAGTGTATGCAATGAAGCACTACAACTCATCCCACCCCACAAAGAGGATATTACCGACGTTGCGGAAACGGAGAATGTTCAGTACCTTCAGTTTGATGACTTAGATAAAGATGGCAATCATATAATAACTTGGGTTGACATTACTCGTGACAAACGTGAcgatttaaaatactaa
Protein Sequence: MTSLLSCEDTIRPKLDIRLKEGNLKGEQFMNDASALDPEGYIIKNAKCFLCDRNFVEGEGTFLIFEIRLRDDGGIDNPLSLIISTALGRDLDENSSHSPLLCESCNKIILEFERLLQKFCEKRMQIIKSYNRTVHKYNIDPILIDSESESIPGDIICFDELSENIIIDDLHYKYKNLNSDDSPNEFKGSKEMASNILEKNEITLDSVGADLVEEIIDCDTIEDDGSLLNTDFQCMQKNEDYSDKHCNETISDIAKNVEPGLIHSELLSHTLQNNKNEETLIYDPDDNNIASPSLNYTITDENSVPDDEMIMDEQFKMVFEQEDNLYFCLLCGELKPLTAEPFAEHMIQCHDLKFYACEHCSSGFLSVESLKEHIENTHEKLYVTTETDCSEYQCNVCQQVFINLRLLRVHKRTHNNASLQYECSECYKKYSCRNLLLDHMNVHTGLRPYKCTKCPKDFTSKCTLQTHMKIHSERLRPYKCDICNKAFLNQQNLNHHKKLHLGEKTFICDICSKAFSTQHNLDAHKIAHTSQRPFTCRTCGKAFARRAEIKDHERIHTGEKPYKCDMCEAAFAQRSNLMTHRKSTHLNEKLHKCDQCDRSFKRRRLLQYHINAVHTGVRPHECEICGSSFVYPEHKKKHMLIHGNTKPYICEVCGKEFNSCANRNAHRYVHSTKKPYECLKCGAGFMRKPLLLAHMKHSGHTNDTIIINQPHISGKGMLTLESEMSTIDSSDDISEVAVNSSQESNSSVCNEALQLIPPHKEDITDVAETENVQYLQFDDLDKDGNHIITWVDITRDKRDDLKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00303960;
90% Identity: -
80% Identity: -