Basic Information

Insect: Ceratitis capitata
Gene Symbol: -
Assembly: GCA_000347755.4
Location: NW:295914-299722[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.69 35 4.6 0.2 1 23 343 366 343 366 0.92

2 12 1.5e-05 0.00075 19.3 2.0 1 23 380 402 380 402 0.99

3 12 0.0011 0.056 13.4 2.2 1 23 409 431 409 431 0.98

4 12 1.6e-05 0.00079 19.2 4.9 1 23 437 459 437 459 0.99

5 12 0.00053 0.027 14.4 5.0 1 23 466 488 466 488 0.98

6 12 7.3e-05 0.0037 17.1 0.6 1 23 494 516 494 516 0.96

7 12 4.9e-05 0.0025 17.7 0.2 1 23 522 544 522 544 0.98

8 12 7.8e-06 0.00039 20.2 0.6 1 23 550 573 550 573 0.98

9 12 1.3e-05 0.00067 19.5 2.6 1 23 579 602 579 602 0.95

10 12 0.00014 0.0069 16.3 1.8 1 23 608 630 608 630 0.97

11 12 0.00015 0.0075 16.2 1.5 1 23 636 658 636 658 0.97

12 12 0.022 1.1 9.3 0.1 1 22 664 685 664 688 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.69	35	4.6	0.2	1	23	343	366	343	366	0.92
2	12	1.5e-05	0.00075	19.3	2.0	1	23	380	402	380	402	0.99
3	12	0.0011	0.056	13.4	2.2	1	23	409	431	409	431	0.98
4	12	1.6e-05	0.00079	19.2	4.9	1	23	437	459	437	459	0.99
5	12	0.00053	0.027	14.4	5.0	1	23	466	488	466	488	0.98
6	12	7.3e-05	0.0037	17.1	0.6	1	23	494	516	494	516	0.96
7	12	4.9e-05	0.0025	17.7	0.2	1	23	522	544	522	544	0.98
8	12	7.8e-06	0.00039	20.2	0.6	1	23	550	573	550	573	0.98
9	12	1.3e-05	0.00067	19.5	2.6	1	23	579	602	579	602	0.95
10	12	0.00014	0.0069	16.3	1.8	1	23	608	630	608	630	0.97
11	12	0.00015	0.0075	16.2	1.5	1	23	636	658	636	658	0.97
12	12	0.022	1.1	9.3	0.1	1	22	664	685	664	688	0.90

Sequence Information

Coding Sequence: atgacgaGTTTATTATCTTGCGGAAATGCAATCGGACAAAAGTTGGATTTAACTTTAAAAGAAGAATACCTGAATGGAGAACAATATATGAATGATGCAAACACTTTAGATCCAGAGgcatatattatagaaaatgcGAAATGCTTTCTCTGTGATCGTAATTTTGTTGAAGGGGAAggtacttttcttatttttgaaattcgtttGCGTGATGATGGAGGAATTGATAATCCTCTCTCGCTAATATTATCAACAGCTCTAGGCAAAGATCTGGATGAAAATAGTTCTCACTCACCTCTACTTTGCGAGTcttgtaacaaaaatattttagaatttgagaggctgcttcaaaaattttgtgaaaagcgtatgcaaataattaaatcgTATAACCGAACAGTCCACAAGTATAACATTGATCCTATTATAATTGATTGTGAAAGCGAAGTGACTCGTGGCGACAgtatatattttgatgaaatatccaacaatataataattgaCGATCtgcattgtaaaaataaaagttcaaactGTGACGATTCGCCAAATGGCAGCAATGAATCAAAAGAAATGGAATCGATTTGCGTTGGAGCAGACTTGGTAGAAGAAATTATTGATTGTGACCCAATAGAGGTCGATGGATCTATTTTAAACCCCGATTCTCCATGCATGGAGAATAATGAAGATTTAATTAATGATATTCATTGTAATGGAACTATTTCGGATATTAGTGATAAAGCTGAACAAGATTTGATTAACTCTGAGTTGTTACCACACACATTAGACATCAAAAGCGAGGAGACATTAATATATGATCCAGATGACAATGCTAcacCAGCGATAAATTATACATTTGCTGCTGAAAATTCGGTGCCAGATGGTGAAATGATTGCCGATGAACCattcaaaatggtttttgaGCAGGTAGACAACTTGTACTTTTGCTTGCTTTGTGGAGAGCTAAAGCCATTGAGTGCGGAACCATTCGCAGAACATATGCTACAGTATCACGACCTAAACTTTTATGCCTGTGAACATTGTTCTGCTGGTTTCCTTTCAGCTGAAAGTGTAAAAGAGCACATTGAAAATactcatacaaatttttgcatAGCCACCGAAGTGGACTCTCCTGAATACGAGTGCAATGTATGCCAACAAGTTTTTGCTAACCATCGGTTACTTCGTGTGCATAAACGAACTCATAACAACACCTCCTTACAATACGAATGCTCTGAATGTAATAAGAAATATAGTTGCCAAAATCTTCTACTTGATCACATGAACATCCACATAGGCCGCCGACCATATAAGTGCACAAAGTGTCCCAAAGACTTCACTTCAAAATGTACATTGCAAACACATCTGAAAATTCATAGTGAACGACTGCGACCttacaaatgcaataaatgtaataaatcatTTCTTAACCCACAATCTCTTACTCATCATAAAAAGCTACACTTAGGAGAAAAGGCATTCATTTGTGATATATGCTTAAAAGCCTTTAGCACCCAGCATAATTTGGATATCCATAAGATTGTTCATACCGGGCAGAGACCATTCGTGTGCAGAACTTGTGGTAAAGCTTTTGCACGTCGGGCTGAAATTAAAGATCACGAGCGTATCCACACAGGAGAGAAGCCTTATAAATGTGATATGTGCGAGGCTGCATTCGCACAGCGTTCTAATTTAATGACGCATCGGAAGTCTacacatttaaatgaaaaatcgcACAAGTGCGATCAATGTGATCGTTCTTTCAAAAGACGTCGATTATTACAGTATCATATCAATGCTGTACATACAGGTGTGCGTCCCCACGAATGTGAAATATGTGGATCGTCATTTGTGTATCCTGAACATAAAAAGAAGCATATGCTTATACATGGAAATTCTAAGCCATACACATGTGAAGTATGTGGCAAAGAATTCAATAGTTGCGCTAATCGGAACGCCCATCGATATGTGCATAGCTCCAAAAAACCATATGAATGTATTAAATGCGGGGCTGGGTTTATGCGTAAACCATTGTTATTGGCGCATATGAAACATGCGGGGCATACAACCGATACTATAGTAATAAACCAGCCACATATCAGTGGTAAGGGAATGCTGAGTTTGGAAAGAGAGATGAGCACTATTGATTCGTGCGATGATATATGTGAAGTTGCTGTTAGTTCGTCACAAGAATCGAATTCAAGTGTGTGCAATGAAGGACTTCAACTTATTCCACCTCACACAGAAGATATTTCCGACGTTGCGGAAACAGAGAGTGTGCAGTACCTCCAATTTGACGACTTAGATAAAGATGGTCATCAAGTAATAACTTGGGTTGACATTGGGCGTGACAAGCACGTGATGTACTAA
Protein Sequence: MTSLLSCGNAIGQKLDLTLKEEYLNGEQYMNDANTLDPEAYIIENAKCFLCDRNFVEGEGTFLIFEIRLRDDGGIDNPLSLILSTALGKDLDENSSHSPLLCESCNKNILEFERLLQKFCEKRMQIIKSYNRTVHKYNIDPIIIDCESEVTRGDSIYFDEISNNIIIDDLHCKNKSSNCDDSPNGSNESKEMESICVGADLVEEIIDCDPIEVDGSILNPDSPCMENNEDLINDIHCNGTISDISDKAEQDLINSELLPHTLDIKSEETLIYDPDDNATPAINYTFAAENSVPDGEMIADEPFKMVFEQVDNLYFCLLCGELKPLSAEPFAEHMLQYHDLNFYACEHCSAGFLSAESVKEHIENTHTNFCIATEVDSPEYECNVCQQVFANHRLLRVHKRTHNNTSLQYECSECNKKYSCQNLLLDHMNIHIGRRPYKCTKCPKDFTSKCTLQTHLKIHSERLRPYKCNKCNKSFLNPQSLTHHKKLHLGEKAFICDICLKAFSTQHNLDIHKIVHTGQRPFVCRTCGKAFARRAEIKDHERIHTGEKPYKCDMCEAAFAQRSNLMTHRKSTHLNEKSHKCDQCDRSFKRRRLLQYHINAVHTGVRPHECEICGSSFVYPEHKKKHMLIHGNSKPYTCEVCGKEFNSCANRNAHRYVHSSKKPYECIKCGAGFMRKPLLLAHMKHAGHTTDTIVINQPHISGKGMLSLEREMSTIDSCDDICEVAVSSSQESNSSVCNEGLQLIPPHTEDISDVAETESVQYLQFDDLDKDGHQVITWVDIGRDKHVMY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01045642;
90% Identity: -
80% Identity: -