Nasi016904.1
Basic Information
- Insect
- Neoceratitis asiatica
- Gene Symbol
- PAXBP1
- Assembly
- GCA_030068015.2
- Location
- CM061529.1:49874683-49879802[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.74 7.8e+03 -3.6 0.2 50 77 415 442 399 473 0.64 2 2 1.2e-28 1.3e-24 87.5 1.3 2 271 646 854 645 857 0.93
Sequence Information
- Coding Sequence
- ATGTCGTTATTTCGGAAGCCAAAGAAAATACAGAGGCGGGTGTTTTCGAGTACATTAGACGACGAAGAAGAAAATGCGGTGGGTGCTACGGAAATGGAAGTTGATGTGGAGCAGACTGTAGAGATTAATAAGAAAAGCAGCAGCACTAAAAAAACTAGCACTAAAACagataaaaatgaagaaaaacccAAATCTCTACTTAGTTTTGCAGACGAAGaGGAGGATATAGAGGTATTTCAGGTGCGAAAATCatcaaacagtaaaaaaattatgcgtATGTTGGACAGAGAGCGACGCAGAAAAAGAAAGGAGGAACGTCAAAGTACACAACAGCCGTCAATAAGTAGTGCTAATGGGGGAGCAAGTTTCGGAGCTAGTGGAGGTTCATCGCTTGAACGACAGCGTGATCGACAATCGCAAATACGTTTTGAGAACGGGAGATCTTCTAAcggcagcaacaataataactcTAATAATTTAGGTTCAACAACTACGTCTAGCAATAAATATAAGGGTACAACCCTAGCATCTGGCGGAAAAGCCGTAGGCACTGCCTCAGCATCTGCTGCTGAGCagtgtaaaagtaaaaaatctgaTTGTATCCAAACAGAAATACGCACAGACGACTTTGTGCTTGTTGTTAAAAAATCCGAACCGGATATTATACTCAATGGGCGCGCAGCAATATGTGCTGGCCGCAACGACATATCGGATGAAGATGAAAAAGAATGTGATGAAGAAGACGATCCAGATGGAAACCATCGCTTTTCTAAACCTGAACACCTAAAACAAATGCTGGAAAGTGGTTCTATACCCGATGCTGCGATGATACACGCAGCGCGAAAACGTCGTCAGAAAGCCAGAGAGCAAGGCGATTTCATACCTGTTGAGGAACCGAAAGAACCTGTGAAGAAGGGTAGTCGATTGGCACATGAAGATGTAGAAGGTGATAACTCGGATGATGAGGAGCGTATAGACATGACTGTTGCAACAGCCAAAAAGGAACGTGAGGAGCGACGTGAACAATTTTACGCTGTGGAAAACAACGATTATACTGATGAAGATTCCGATCGTGAGATGCATGAATGGGAGAATCAGCAAATACGCAAAGGTGTAACCGGCGCGCAACTGGTGAGCGCCCAGCATGATGCGGTACTATCGAGATTTATGATAAAACCTGCCGCTACAAATGCATTAGAATATGTGCCGGAACAACAATCGACGTCGACACTGTTGCAGCAAGCATATGCGAAGAGTGCCTTGCAGAAACCGCAACAAATACTGAGTGTATCCACGAAAACAAAGAAGGATAAACCCAAATCGTCGTCCATGCGTACGCCAAAGGAGATACAGGATGCTATACAAACACGcttgACAAAGTTACGTGAAGTTAATGAAAAGCATACGAGTGATATCGAGCGCATAGTCACTGATTTGAAGGCTTTGAAAATTGAGGAATTAGATTGTACACAAAAAGCGCCAGCCGCAGCGGCAAAATATCGTTTTTATCAGGAATTGAAATGCTACGCTTCCGATTTAGTGGATTGCTTGGCGGAGAAGACCCCAGTTATCAATGATTTAGAAAAGCGCACTCTACAAGTATGGTCAAAgcatcaaaattttcttatcgAACGTCGTCGACAAGATGTTCGCGATCAAGCCAAGGAAATGGCTGAAGCttcaaagcctGCTGGTTCCCGACGCGGTACCGACTCGGAAGAACAGATCAGACGTGCTGCAGAGAGAGAAGGTAGACGTACACGGCGGAGATGCGAGCGTGAAAAGAACAATATGCTTATATCGCATTTAGATGGAATGTCCAGTGATGATGAAACGTCCGATCGCTATcaggaacaaataaaaaataattttgaTCAAACACAGAGGGAGTCAGAGGAAATATTCAGTGATGTAAATGATGACTTTTATAAAGTCGAatcaattttgatgaaattttatgcTTGGCGTACGACCGACATCGACTCTTACAAAGATGCATTTGTTAGTCTATGTTTGCCAAAGGTTCTCGGACCACTTGTTCGCTTGGAAATGTTGAACTGGTCACCGTTGCTGGAAGAGTACAAAGACATTGAAAAAATGAATTGGTATTCTGCTTGTATGCTTTATGCTTGGAGTGAATATGAAACCGAAGAAACGTTAAGACTTGATCCCGACGTGAATTTAGTGCCAACCATCattgaaaaaatagttttaccAAAAGTTGCAGACATTGTCAATCAATGCTGGGATCCATTATCAACAACACAGACATTACGTTTAATTGGTTTTATAAACCGGTTGGGGCGTGATTTTCCACTCAAAGAAACATCAAAACAATTGCaacaattgtttgaaaaaattttggaaaaaatgaagTTGTCGTTAGAAAACGATGTGTTCATACCCATATTTCCTAAACAagtGCAAGAGGCAAAGACTTCCTTCTTTCAGCGTCAATTTTGTAGTGGCCTAAAATTGTTTCGAAATTTCCTTAGTTGGCAGGGTATTTTAGCGGATAAACCTTTGCGTGAGATGGCGATTGGATTGTTGTTAAATCGTTATCTGCTACTCGCTATGAGAGTCTGCACTGCCAATGATGCAATAACTAAAGCTTATATTATAGTCAATACATTACCAACCGTATGGTTACAACCAGAATCGGAAACATTAAAGAATTTACAGTTActaatttcttatataaaacaaactttAGACACATTCGACGCCAGTAATCCTTTCTATATACAAACATGCGATAAAGctaaacaaattttgcaaaggCTTCATAGCTATTAG
- Protein Sequence
- MSLFRKPKKIQRRVFSSTLDDEEENAVGATEMEVDVEQTVEINKKSSSTKKTSTKTDKNEEKPKSLLSFADEEEDIEVFQVRKSSNSKKIMRMLDRERRRKRKEERQSTQQPSISSANGGASFGASGGSSLERQRDRQSQIRFENGRSSNGSNNNNSNNLGSTTTSSNKYKGTTLASGGKAVGTASASAAEQCKSKKSDCIQTEIRTDDFVLVVKKSEPDIILNGRAAICAGRNDISDEDEKECDEEDDPDGNHRFSKPEHLKQMLESGSIPDAAMIHAARKRRQKAREQGDFIPVEEPKEPVKKGSRLAHEDVEGDNSDDEERIDMTVATAKKEREERREQFYAVENNDYTDEDSDREMHEWENQQIRKGVTGAQLVSAQHDAVLSRFMIKPAATNALEYVPEQQSTSTLLQQAYAKSALQKPQQILSVSTKTKKDKPKSSSMRTPKEIQDAIQTRLTKLREVNEKHTSDIERIVTDLKALKIEELDCTQKAPAAAAKYRFYQELKCYASDLVDCLAEKTPVINDLEKRTLQVWSKHQNFLIERRRQDVRDQAKEMAEASKPAGSRRGTDSEEQIRRAAEREGRRTRRRCEREKNNMLISHLDGMSSDDETSDRYQEQIKNNFDQTQRESEEIFSDVNDDFYKVESILMKFYAWRTTDIDSYKDAFVSLCLPKVLGPLVRLEMLNWSPLLEEYKDIEKMNWYSACMLYAWSEYETEETLRLDPDVNLVPTIIEKIVLPKVADIVNQCWDPLSTTQTLRLIGFINRLGRDFPLKETSKQLQQLFEKILEKMKLSLENDVFIPIFPKQVQEAKTSFFQRQFCSGLKLFRNFLSWQGILADKPLREMAIGLLLNRYLLLAMRVCTANDAITKAYIIVNTLPTVWLQPESETLKNLQLLISYIKQTLDTFDASNPFYIQTCDKAKQILQRLHSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00091240;
- 90% Identity
- -
- 80% Identity
- -