Nint024558.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- stc
- Assembly
- GCA_947623515.1
- Location
- OX392462.1:62162718-62165908[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.9 3.4e+04 -4.0 1.6 15 19 325 329 324 329 0.81 2 15 0.054 9.8e+02 0.9 0.2 4 10 358 364 357 365 0.95 3 15 5.2e-06 0.094 13.7 16.4 4 19 372 387 370 387 0.93 4 15 2 3.6e+04 -4.6 1.4 6 10 413 417 412 417 0.87 5 15 1.3e-06 0.024 15.7 12.3 3 18 425 440 423 441 0.91 6 15 1.7 3.1e+04 -3.9 0.2 8 11 446 449 445 449 0.82 7 15 1.2e-07 0.0021 19.0 18.6 1 19 481 499 481 499 0.98 8 15 5.6e-05 1 10.4 16.3 4 18 547 561 540 562 0.86 9 15 0.0053 96 4.1 8.9 1 11 602 612 602 613 0.96 10 15 3.1e-09 5.7e-05 24.0 14.4 1 18 629 646 629 647 0.97 11 15 1.2 2.2e+04 -3.4 1.5 6 10 676 680 674 682 0.64 12 15 2 3.6e+04 -6.0 10.2 10 18 694 703 683 704 0.78 13 15 2.6e-08 0.00046 21.1 13.9 1 16 740 755 740 765 0.92 14 15 1.4e-07 0.0026 18.7 14.1 1 19 772 791 772 791 0.96 15 15 0.41 7.5e+03 -1.9 0.5 7 12 806 811 800 811 0.71
Sequence Information
- Coding Sequence
- ATGTCGGACGCATTCCATCGGTACCACGACGGCCCTGGAGGCAGTGGCGGTGGTGCCAACAACAACAACTATGTAAACTTCAATCAGTTCATGATGCAACACAACCTCATTGCGGGTGAAGCTGGTGGTGCGGGCGCAGCCGATGGCATGGGCTCGACAAATCCTTTCCACTACGACGGCGGTTATGGACATAACTACCAGGTCGACGAGTACTACACAAATGGCGGCGGCGGAATGGTCCCGTCCAGGTACAACAACCAGCGCAACAGCTACTCCAACTCCACTCTTCATGCAACCGCAGCTGAATTCATTCCAAGATTCGCCAACTTGTCGATGACAAGTGACGAAGTGCGGAACGGTTTAAAGGCTGAGGGCATAACAATCGGCCCAGATCCAGTCGTATCAGCAGACATGAAGAACGCCAACACCAATGGAACCAACGGCCCATCAACCAGTCGCGAAGTTTTTCGCGACAGCTACGGAGAGTCGGGCGAGAACAAGTCGCCACCACAGCGCTACACTGGTGCCACGAGCAAGAATCGCGACACCACATCAAGAGGTGGCGTCGGCGGCGGTATGTCGTCCTCACGGCGGCAAAACGGCCGCGAATATCACCGAAACCAACGGTACGACAATCATAGAAGCAATAAGCGGCGCGACGATTGGAATCGAAATCGCGACCGCGTGAACGCGTTCCGCGAGGAGAAGTACACCCTGGAAAACGGAAAAGACAGTCCACAGACGTCGCCTGAAAAGAAATCGCCCAAAAAGCCGCATCCCGAGAACGAAAAGCTATCACAGCGGGAGAAACTGATCCGGGAGATCGAAGGACGCCGGCTTGAGTGTCTTGTTTGTGTGGAGCCAATCAAGAGCCACAACTCAGTCTGGTCCTGTCACAACTGCTACCACATTCTGCATCTGAATTGCATTATTAAATGGGCCATCAGCTCCAAGTCCGAGGACGGATGGCGCTGTCCTGCGTGCCAAAATGTCGAAAAAGACGTGCCACGCGACTATCTTTGCTTCTGCGGCAAGGTAAGGAGTCCCCAGCTGAATCGCAACGACATCGCGCACAGTTGTGGCGAAGTGTGTGGCCGTGTGGAAGGTTGCCCGCACGCCTGCACTCTGCTCTGCCATCCCGGTCCGTGTCCGCCGTGCCAAGCCAACGTCACGCGGGAATGTGGCTGCGGAAAGACCGTCAAGACCATGCAGTGCTATCTGAAGGAGTCCATCGAGTGCGAGGCCAAATGCCAGAAGTTGCTGAACTGCGAGCTGCACGAATGTGAGGACAAATGCCACGAGGGCAAGTGTAGGCCGTGTGACCACAAGGTCGACCAGAAGTGCCATTGTAGCAAGCAGAATCGCCAGGTGGCTTGTACCCGAGACTCTCACGAGAAGACTGCGTATTCGTGCGGCAAACCCTGCGGCAGGGATCTGACTTGTGGTAATCACAAGTGCAAGGACTGCTGTCATGCCGGAGAGTGTCGTCCTTGTAAAACGAGCCCTGAAATGGTGACATCCTGCCCCTGTGGCAAGATGCCGGTATCGCCAGAGCAGCGAAAATCATGCTTGGACCCGATTCCCATCTGCGAAGGCATTTGCAACAAGACACTGCGCTGCGGCAAAGCTGCCCACCCCCACCACTGCACAAGTAAATGCCACCTGGGCAATTGTCCACCGTGCAACAAGCAAACGGCAGTCAAGTGCCGGTGCGGTCACATGGATCAAATGATTAAATGCCGCCAACTGTCCACCAGGGCTGACGATGCGCGCTGCAAAAAGCGATGCATAAAGAAACGCTCGTGCGGCAAACACAAATGCAGCCAAGAGTGCTGCATCGACATTGACCACATCTGCATGATGCCCTGCAACTACACGCTTTCGTGTGGCAAGCACAAGTGCGATCAGCCATGTCATCGTGGCAATTGCACCCCCTGCTACCGCAGCTCTTTTGACGAGCTGTACTGCGAGTGCGGAGCCGAGGTGATTTATCCGCCGGTGCCATGCGGCACTAAGAAACCACCCTGCAAGAAGCCCTGCTCACGCCAGCATCCTTGCGATCACCCAGTTCAGCACAATTGCCACTCGGCTGCGAACTGTCCGCCCTGCATGATGTTCACCACAAAGTGGTGCTTCGGCAAACACGAACAGAGAAAAACCATTCCGTGTAGCCAGGAGAGCTTCAGTTGCGGACTGGCGTGCGGCAAGCCTCTCGCGTGCGGGCGGCACAAGTGCATCAAGCCATGCCATGAAGGACCCTGCCAGGTGGCGGGTGATATTTGCAAGCAGAGCTGTTCAACAGTCCGGGCAGGATGTGGACACAAGTGTATGGCCCCTTGCCACGAGGGGGATTGCCCCGAGACACCCTGCAGAGAAATGGTGGAAGTGACCTGCGAATGCGGCAATCGCAAACAATCTAGAACTTGTCACGATTTCGCCAGAGAATACCGTCGCATAGCCACTGCGCAGTTGGCCTCGTCGATGGCCGAAGTCCAGCGTGGCAACACCATAGAGCTCAGAGACATCCTTGGACCAGTAAAAATGAACAACAACAAAGCGCTTGAATGCAACGATGAGTGCCGCACACTGGAGCGCAACCGCCGCTTAGCTATTGGCTTGCAAATCCGTAACCCCGATCTGCCACAAAAGCTACTCACCAAATATTCAGACTTTATTCGGGGCTATGCCAAGAAGGACCCCACTCTCGTGAAATCCATCCACGACGCGCTCACCACTCTTGTCAAACTGGCAAAAGAGAGCAAGCAAAAGTCGCGCAGCCATTCGTTTCCAACAATGAACCGCGAGAAACGCCAACTGGTCCATGAGATGTGCGAAATGTTCGGAGTCGAGTCCGTGGCCTACGACGCTGAGCCCAACAGGAATGTCGTTGCGACAGCATACAAGGAAAAGTCTTGGTTGCCAGCGCAGAGTATCATGGAAGTAATGCAACGTGAAAGCGGACAGCGACGCGTGCCAGTGCCAAGCAACAATGCGTGGGGCATTAAACGGTAG
- Protein Sequence
- MSDAFHRYHDGPGGSGGGANNNNYVNFNQFMMQHNLIAGEAGGAGAADGMGSTNPFHYDGGYGHNYQVDEYYTNGGGGMVPSRYNNQRNSYSNSTLHATAAEFIPRFANLSMTSDEVRNGLKAEGITIGPDPVVSADMKNANTNGTNGPSTSREVFRDSYGESGENKSPPQRYTGATSKNRDTTSRGGVGGGMSSSRRQNGREYHRNQRYDNHRSNKRRDDWNRNRDRVNAFREEKYTLENGKDSPQTSPEKKSPKKPHPENEKLSQREKLIREIEGRRLECLVCVEPIKSHNSVWSCHNCYHILHLNCIIKWAISSKSEDGWRCPACQNVEKDVPRDYLCFCGKVRSPQLNRNDIAHSCGEVCGRVEGCPHACTLLCHPGPCPPCQANVTRECGCGKTVKTMQCYLKESIECEAKCQKLLNCELHECEDKCHEGKCRPCDHKVDQKCHCSKQNRQVACTRDSHEKTAYSCGKPCGRDLTCGNHKCKDCCHAGECRPCKTSPEMVTSCPCGKMPVSPEQRKSCLDPIPICEGICNKTLRCGKAAHPHHCTSKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCIKKRSCGKHKCSQECCIDIDHICMMPCNYTLSCGKHKCDQPCHRGNCTPCYRSSFDELYCECGAEVIYPPVPCGTKKPPCKKPCSRQHPCDHPVQHNCHSAANCPPCMMFTTKWCFGKHEQRKTIPCSQESFSCGLACGKPLACGRHKCIKPCHEGPCQVAGDICKQSCSTVRAGCGHKCMAPCHEGDCPETPCREMVEVTCECGNRKQSRTCHDFAREYRRIATAQLASSMAEVQRGNTIELRDILGPVKMNNNKALECNDECRTLERNRRLAIGLQIRNPDLPQKLLTKYSDFIRGYAKKDPTLVKSIHDALTTLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEMFGVESVAYDAEPNRNVVATAYKEKSWLPAQSIMEVMQRESGQRRVPVPSNNAWGIKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542617;
- 90% Identity
- -
- 80% Identity
- -