Basic Information

Insect: Neoascia interrupta
Gene Symbol: -
Assembly: GCA_947623515.1
Location: OX392462.1:47793908-47811644[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00022 0.032 15.7 3.4 1 23 249 271 249 271 0.98

2 11 0.0014 0.21 13.1 9.5 1 23 277 299 277 299 0.96

3 11 0.0017 0.25 12.8 9.1 1 23 305 327 305 327 0.98

4 11 0.00051 0.075 14.5 1.6 1 23 333 355 333 355 0.95

5 11 2.5e-05 0.0036 18.6 0.5 1 23 361 383 361 383 0.97

6 11 2.2e-06 0.00032 22.0 0.1 1 23 389 411 389 411 0.98

7 11 0.00011 0.016 16.6 1.2 1 23 416 438 416 438 0.96

8 11 0.00013 0.019 16.4 0.0 1 23 444 467 444 467 0.98

9 11 7.8e-05 0.011 17.1 0.4 1 23 580 602 580 602 0.97

10 11 0.011 1.6 10.3 3.4 1 23 694 716 694 716 0.96

11 11 0.0049 0.72 11.4 4.9 5 23 729 747 721 747 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00022	0.032	15.7	3.4	1	23	249	271	249	271	0.98
2	11	0.0014	0.21	13.1	9.5	1	23	277	299	277	299	0.96
3	11	0.0017	0.25	12.8	9.1	1	23	305	327	305	327	0.98
4	11	0.00051	0.075	14.5	1.6	1	23	333	355	333	355	0.95
5	11	2.5e-05	0.0036	18.6	0.5	1	23	361	383	361	383	0.97
6	11	2.2e-06	0.00032	22.0	0.1	1	23	389	411	389	411	0.98
7	11	0.00011	0.016	16.6	1.2	1	23	416	438	416	438	0.96
8	11	0.00013	0.019	16.4	0.0	1	23	444	467	444	467	0.98
9	11	7.8e-05	0.011	17.1	0.4	1	23	580	602	580	602	0.97
10	11	0.011	1.6	10.3	3.4	1	23	694	716	694	716	0.96
11	11	0.0049	0.72	11.4	4.9	5	23	729	747	721	747	0.92

Sequence Information

Coding Sequence: ATGTGTGCAGCACAGAGCAACCCGCAGTCCAGCTACGGCTACACTTGGAATTTCGCAGACAGTTCTCGTGCTGAATCTGTCGTCGAAATATCGCCCAACATTAACTACACAGTCAGCAGCGAGTCGATGCCTTACCTCTTTACGGATGGCTCGTTGACGCTGCAAAAGGACATCAAGGGTACGCTGACAACCAACAAGGGAAGTGTCGTCCGCCGCATGTTTGTGGTGAACGAGCCCTTCAACGCCGGCACTCAAAGAGTAATCGCGACTGGCGGTGCTTCCACTGTGGTTAAGAAACAGGAGCAACAACAAGTGCTGAGCATCAATTGTGATAAGAACTATCTCCTTGTAGACCAGTCCGATCAATCACATTCGATTGGAAATGGGATTGTCGATACGAAAACGCAGACCATATTGACAACTACAACCGCCGGCAAGACACATTACAGCCCCATTGGACCGCTGCATCTCACGGCCGAAGAATGTAATGAAATTCTAATGAAGCGTGCGCTAGCAGCATCGCAACAAAACCACACGACTATTACAACGTCAGATGGACAAACTGGAGATATTATTCCTGGCATGTCAGTGCATGTCCAGAAGGTTATTCAGGGTCTGGAAGACACTGAAGACTCGCAAGATTCTCCCAATTGCAAACTAGAGCCTGCTATGGAAATATCACCCAAAGCGGAACTTCAAGATTCGAACGATCAGACAACCAATCAAACCGTCAAGGAAAGGCCGTATAGTTGCGAGGAATGTGGAAAATCATTTTTATTGAAACACCACTTGACCACTCACGCCAGAGTGCACACAGGGGAACGACCTCATGTGTGCGTACACTGCGGGAAGAGCTTTGCCCATAAACACTGTCTAAACACCCATTTGCTGTTGCATTCGACCGAACGTCCTTATCAATGCTGCGAGTGTAAAAAGAGTTTTACACTCAAGCATCACCTTCTAACACATTCGCGGGTCCACAGCAGAGACCGGCCATTTGTCTGCCAAGAATGTGGCAGAGCGTTTCCGCTCAAGCGGCATTTAGTTACCCACAGTAAATTTCACGCTGGTGAACGACCCTACGTGTGTGAAGAATGCGGCGAGAGTTTCGCCCAGGAAAATCATTTAATAATGCATTCACGTTTTCACGGATCGGTGAATCCTTTTGTCTGTCCCGATTGTGGAGTTACCTTTCCCCGGAAGTTTCAACTGGTCAACCATGGTCGAATCCATGGAAAGGTGCCGCATGCTTGCACTGTCTGTGGCAAAGAGTTTCTGCAAAAACGCACATTGGTTTCACATATGAGAATTCATACTGGTGATCAACCGTATCCGTGCACTGGGTGTGGAGATGGTTTTCAATCAAAGGCGGAACTTAATCAGCACATACGCGTTGCTCACGGTGGAGTGAATCCGAATACATCTCACACATCGATTGTGCCAGCAAACACAATTGTAGCAACAACAACCCACAATCCCAATCAAATTCAGATTCACCAaccgcagcagcaacagcaacaacaacatcatcatcaacaacagcaacagcagcagcaacaacagcagcaacaacaacagcaacagcagcaacaacagcagcaacaacaacagcagcaacagcagcagcaacaacaacaacagcagcaacctcagacgataacggtagttagtaaccccaacaattcagcgctattgacggttacttccaatgaaaacaacTCAGGCAATCGACCACAATTTGCATGCCGTGAATGCGGATGCGCCTTCAACAGCAAAGAAGCACTGGCCCTGCATCTGCGATTGCACACAGGTGACAAGAACCTTATGACAGATTTGTGTGCGTTGACAGCAGCAATACCTGGTCACTACTTAAATACCACAAATCTTAATCAAGCAACAGTTGTTGCGGCTAATCCCAACATAGTGTCGCAAACCGCTGTACCAGTGCAAATTATATCATCGACCGGTCAAGTTGTTAGCCAAACAACAATGGTACAGAGTGCGCCCCAGCCACAGACCATAGTGACAGCAGTGCAGGCGGCTGCTCCCCAACAACAGAACGCTACCAAGCCCAAGAGTCACTTCTGCAACAGTTGCGGCAAAGGATTCGCAGCCAAGCACGGTCTTTTGCAGCACAACCGAAGGCACCCCAACGGTGGCTGCACCGTTCGCACACACGTCTGTGAGTGCGGCAAGGCGTTCTTCCAAAAGAATCATCTTATGCTCCATCAGCGTCAGCATTTAGAGACGAAACCCAGCATTTCCCAACAGCAACAGGAcgttattcaacagcaacagcagcagaatcaagtgcagcagcagcaaataacccagcaacagacgcagcagcagcaaggccagcagcaccaaacaatgaccACCCGAGAGGTGCTGATCGGCAACCAGGCGCTGCATGTTCAGGTCTTGCAGGGCTCCAACACTGCCCAGGTCATCAAATACGAGATAAACATACCACAGGAGGGCCAGACGATTGAGTAA
Protein Sequence: MCAAQSNPQSSYGYTWNFADSSRAESVVEISPNINYTVSSESMPYLFTDGSLTLQKDIKGTLTTNKGSVVRRMFVVNEPFNAGTQRVIATGGASTVVKKQEQQQVLSINCDKNYLLVDQSDQSHSIGNGIVDTKTQTILTTTTAGKTHYSPIGPLHLTAEECNEILMKRALAASQQNHTTITTSDGQTGDIIPGMSVHVQKVIQGLEDTEDSQDSPNCKLEPAMEISPKAELQDSNDQTTNQTVKERPYSCEECGKSFLLKHHLTTHARVHTGERPHVCVHCGKSFAHKHCLNTHLLLHSTERPYQCCECKKSFTLKHHLLTHSRVHSRDRPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSVNPFVCPDCGVTFPRKFQLVNHGRIHGKVPHACTVCGKEFLQKRTLVSHMRIHTGDQPYPCTGCGDGFQSKAELNQHIRVAHGGVNPNTSHTSIVPANTIVATTTHNPNQIQIHQPQQQQQQQHHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQTITVVSNPNNSALLTVTSNENNSGNRPQFACRECGCAFNSKEALALHLRLHTGDKNLMTDLCALTAAIPGHYLNTTNLNQATVVAANPNIVSQTAVPVQIISSTGQVVSQTTMVQSAPQPQTIVTAVQAAAPQQQNATKPKSHFCNSCGKGFAAKHGLLQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPSISQQQQDVIQQQQQQNQVQQQQITQQQTQQQQGQQHQTMTTREVLIGNQALHVQVLQGSNTAQVIKYEINIPQEGQTIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00671099;
90% Identity: iTF_00984460;
80% Identity: -