Basic Information

Insect: Neoascia interrupta
Gene Symbol: rfx7.L
Assembly: GCA_947623515.1
Location: OX392464.1:109161077-109170789[-]

Transcription Factor Domain

TF Family: RFX
Domain: RFX domain
PFAM: PF02257
TF Group: Basic Domians group
Description: RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 2.7e-32 4.9e-28 98.5 0.0 3 78 260 335 258 336 0.97

2 2 0.66 1.2e+04 -2.0 0.0 22 42 1144 1164 1138 1171 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	2.7e-32	4.9e-28	98.5	0.0	3	78	260	335	258	336	0.97
2	2	0.66	1.2e+04	-2.0	0.0	22	42	1144	1164	1138	1171	0.80

Sequence Information

Coding Sequence: ATGTCCGACAAAAATGTACACCAATTGCAGTGTAAACCGAAGAGTTCCGAACAGTCAATTTACGCCTCACGCAATGCAGAACACCAGTCGACGACGACAGCGATTGCTAATCAGCCAGCAGCTGCTGTTGCAGCTCCAAATCACCCGTCAGTTCTGGGATCGTCTGCAAATGGACGTTTTCCAATCATTGTAGGTGGTGTCAGTGGTCAGCACATTCAAACGTCTCCAGGAACATCGGCGGCTGCTAGTACTTCAATTGGTCTgcaacaacatttccatcatatgcaacagcttcagcagcagcagcagcaacaacaacaacagcagcagcaccagcaacaacaacatcaacatcatctccatcatcatttgcagcagAACCCGCATTTTGAACTATCGAAAATAATGGCTATTAACTCGGGAACATTGACGAGATCGGAATTGCCCTCAACTCTGGGCAACCATCCAGTCTCGAGTGCGATTACCGAGAACGTTTTGAGTCTTATTGGAATGCCAAGTGCTAGTGGGAGTAGTTCCAACAAGACCAGTGACTGTGTCCAAATGCCAGACGAGGAAAAACTAAGAAATGTTCAAGCCATTGTCGAGTCCGGAGTCGGGGATCATGCCAAACAACAAATCATACAAATCCTTGATAGAATTTCAACACTCAAACCAGTTGAGCGATTACTTCTGTACCTTCGAATGCCGGTTGAGACCCCAGAATCAGATCCCCTTCGGCAGCCACAAAATCCTCTCGGAACTAGATCCGAGATCAATCACACAATCAATTGGGTTCGTTCGCATTTGGAGCATGATCCAAAGGTTTCCATTCCAAAACAAGATGTGTACAATGACTACATAGCGTACTGCGAGCGCTTGGATATAAAACCACTTTCGACAGCCGATTTCGGAAAGGTAATGAAGCAAGTGTTTCCCGAGATTCGTCCCAGACGCTTGGGTACACGTGGCCATTCCCGATACTGCTACGCTGCGATGCGAAAAACGACAAAGCTCATTCCGCCACAGCTACCAATGATTGGTGGGAAAAACAGAGACACGATAAGCTGCGAAATCGATTGTGACAATGACACAGATTCGTGGAATACTGTTCGCACATGGGCCGAAGGGCTGCTAAACATTAAGTTCGAAAGTATAAAGGATTTGGCTGAGCATATAACTAAGAACGAGTGTCCATCCGGTGGACCTGGAAGCTCACGAGTTCTATTGCAAAAGAAACTACTTCACAGGGATCCAAAAGAAAAGAGGGTTTATGTCGACCCTGGACCGCTTAAGAAACGGCGAAAGAAAAAGCGCAAAGGCTCAACATCTTCAGAGTCAAGCACGACCCAACAAGGGCCATCACTCAACGAACCGTCTAGATCTAGTGATGACATTATTCTCGGCGCACATGCAATTAAACAGGAAATACTAGACTCACCAAATTCACAGATAAGATCATCAGCAAGTCAAATGCTTTTGCACCATTCCCCTGCCACTTATGACAGTCAGATGCACGGGCATCAACTGCTTCCAATGAATTTAGCCACAGAGGGTGAGCGTAATAAAGGTCTCGCCGGTCAACTGCCACCACAAAGCCCAGTTGCAAAGAATCTTACAAAAACTATTGCGGACCTATCACCTTCGGTTAGTTTGTTGCCAATCGATCCACAAACAGCTCAGCTGGCGTCTGTTAAGGAGGAAATAATTAACGACGACTACAATCCGCAGAACGTGATATGCAAGAAGGTGCGACGGGCACACCTGGCCAAGGGTATCCTCCCCACAGGCAACCCGCCAGTTTCAACCATCTCTACCACTTCTACTGTTGTTATTGAAACGAACACGATACCGCAAACTGTTGAATTGTCAACGGCGGCAACTAGTAACTACCCAATGGGACCACCAGCACAGATTACCACAGCCGCAATGGAATCGGCTAAACTAGCTTCACAGCTACGAGCCAGAAAGCTGCGACTATTGCAAGCCCACAACGATATGTATCAGACGTACGATCCGCAGCAGCAACACCTTCAGCAAAACCAACTGCAACATCCATCACCGCTTGTCGACAACGTCGAGATAACCGAGGACAAGGATGTCGTGCTGCCCGAAAACCTTGGCCTGCCACGTGAGCGCGTTATAAGTATTTGCAACATGGACAAGCATGAGCTAGACGACTATCTGAATACGAACGAAGACGAAGAAAACTCCCAGGATCAAGAAGCGGAATTGCTTCAAATTTTTCAGACGGGAGACGCTGAGAACAATAACAACAAAGCAACGCAGCTGCAGCACCAACAACATCAGCAACAACAACAGCAGCAGCAGCAACTAAATATTGATGCACATAACCCAACGTTGACGGAAATCAATAATTCCAATACGTCGGCATTTGAGGTACCCAGTAAAAAGAAAACAGCAGGTATAGCTGGTGGCTGTTACATCAGAGATCGTGATGACATCACACAGCTTCGCAACTATCTTCATCAGAATTTCAATAAGGATTCGAATGAGGTGACCGGAGCTCTTTCCATAGCAGTCAATCCGCGGGGGAATCCTCAGCAGCAGAAGTTTACTTCAAACGGAAATCATTATATAATGCCGGGCATCTACAACGAAGGGTCAGCCTCAGCGTCTCTAGCAATAATGTCTCAAAAGCATCTAAACGAAACCGCATCACCATCGATGTCTTTGGCCGCCGCAACAGCAGCAGCAACAATAACAACCACAACTACTGTCGCTACTGGTGTCGGTTCAAAAGATCCCTCGATAATACCGGTCGACAGTTACACGCCTGTTACAAACAATGCGCGTGCAACGCAGAAGCGAAAAATCAATCTAAACGCAATGGTACCTGCCCCCAGTACAATGCAAAGGCGAAAGAACTGCACTTTCTTTCCAATTTCGCCGAACACAAATCTAGCAAGTATCACAACAAACAACAGCACCTCGTCTGTTGCCTGCACCTCTTCTGTGTCGGCCACAGCCAATACAAATCTATTTGCTAGTCCAAGATCGTCGGTGCGCATCAAGCCCATACTGCACAAACAGCAATCGCTGCCGGCGGCCGATAAGAATGTCATAACGTCTGCCAACGATCCAATGATTGGAGCTAGTCGAAACGGTAGAAATTACAACACAATCACCTCAGCATCGGCGCCGCCGAGTCCATCGATACAGCAGGAAACGATGATGTTTGGGAAGAGCTACACAAGTAGTGTAGCTGGAAATCCCCTCGGAGGATACAATATACTTCTGCCCAATCAAGACTATCAGCAGGGCTTTCCCAGTTCGTGTGTCGCCAACAAAATGCTACCAAATGATCAAAACTCTTTGGAGTGCGTCCTGGACGAACCGCCGCCTCATTTGATGGCTGAATCACGGTCGCGCAGTGTGCCACTACAGTACCGCAACAGTCCCGCCTTCAATCAAAATGCAAGCTATGCTGGATTCTCGTCGACGTGCAGCTCTGCCGCTCAGACGCCAGTGCCAACACAATTCGCCGACTTCAGTGATACAGCGTCGATTTTGGATATTTTCAGTGATGCTAGTCAAACGCATGGATCCTCGATCAAATTAGAAGAGCCCACAGGAAGCTTGCTCTCCAGTTCGGTTGCGGATATCCTGCAACCAGAATACGGTCGTATTCCGAACAATTTTGGCGGTATTGTCTCGCGTTCAGTGCCATCGACTCCATTGCCCTTGCACAGCATGATCGATCCATTTTTGGGCAGCAAGAAACATAACCAGCAGCAGCAACAGCAGCACCAGCAAGACCCCTTCCCCAGTGCTCAGAGTAAATATTCAACAAAAATGTACGATATTTCCAAGTCAATGCCTACGACGCCGATTACATCGAATACGACAACACCATCGTTCCGATACAGTCCTGAGTTCAATCGAGATTTTCTAATCAACGGTAATACGGTGGAAAGCACACAGGCCTATAGTCGGGCGCCATCTGTTGCCGCGGCCACAGCACCCAGCCTATCCGATTCACTGCTGGACGATGCACGGGGAGGCGGATCAAATTCGCTCACCGACGGCATGGACGATTTGAGCAGCTTCGGTGATGTTTCCGAGTCAATTATGGAAACCGACATACTGAACATGAGTAATCTTTGA
Protein Sequence: MSDKNVHQLQCKPKSSEQSIYASRNAEHQSTTTAIANQPAAAVAAPNHPSVLGSSANGRFPIIVGGVSGQHIQTSPGTSAAASTSIGLQQHFHHMQQLQQQQQQQQQQQQHQQQQHQHHLHHHLQQNPHFELSKIMAINSGTLTRSELPSTLGNHPVSSAITENVLSLIGMPSASGSSSNKTSDCVQMPDEEKLRNVQAIVESGVGDHAKQQIIQILDRISTLKPVERLLLYLRMPVETPESDPLRQPQNPLGTRSEINHTINWVRSHLEHDPKVSIPKQDVYNDYIAYCERLDIKPLSTADFGKVMKQVFPEIRPRRLGTRGHSRYCYAAMRKTTKLIPPQLPMIGGKNRDTISCEIDCDNDTDSWNTVRTWAEGLLNIKFESIKDLAEHITKNECPSGGPGSSRVLLQKKLLHRDPKEKRVYVDPGPLKKRRKKKRKGSTSSESSTTQQGPSLNEPSRSSDDIILGAHAIKQEILDSPNSQIRSSASQMLLHHSPATYDSQMHGHQLLPMNLATEGERNKGLAGQLPPQSPVAKNLTKTIADLSPSVSLLPIDPQTAQLASVKEEIINDDYNPQNVICKKVRRAHLAKGILPTGNPPVSTISTTSTVVIETNTIPQTVELSTAATSNYPMGPPAQITTAAMESAKLASQLRARKLRLLQAHNDMYQTYDPQQQHLQQNQLQHPSPLVDNVEITEDKDVVLPENLGLPRERVISICNMDKHELDDYLNTNEDEENSQDQEAELLQIFQTGDAENNNNKATQLQHQQHQQQQQQQQQLNIDAHNPTLTEINNSNTSAFEVPSKKKTAGIAGGCYIRDRDDITQLRNYLHQNFNKDSNEVTGALSIAVNPRGNPQQQKFTSNGNHYIMPGIYNEGSASASLAIMSQKHLNETASPSMSLAAATAAATITTTTTVATGVGSKDPSIIPVDSYTPVTNNARATQKRKINLNAMVPAPSTMQRRKNCTFFPISPNTNLASITTNNSTSSVACTSSVSATANTNLFASPRSSVRIKPILHKQQSLPAADKNVITSANDPMIGASRNGRNYNTITSASAPPSPSIQQETMMFGKSYTSSVAGNPLGGYNILLPNQDYQQGFPSSCVANKMLPNDQNSLECVLDEPPPHLMAESRSRSVPLQYRNSPAFNQNASYAGFSSTCSSAAQTPVPTQFADFSDTASILDIFSDASQTHGSSIKLEEPTGSLLSSSVADILQPEYGRIPNNFGGIVSRSVPSTPLPLHSMIDPFLGSKKHNQQQQQQHQQDPFPSAQSKYSTKMYDISKSMPTTPITSNTTTPSFRYSPEFNRDFLINGNTVESTQAYSRAPSVAAATAPSLSDSLLDDARGGGSNSLTDGMDDLSSFGDVSESIMETDILNMSNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -