Npan020841.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- -
- Assembly
- GCA_963978885.1
- Location
- OZ022263.1:194574716-194587084[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00028 3.9 9.8 0.2 25 52 217 244 211 246 0.88 2 4 0.0025 35 6.8 0.1 25 52 400 427 394 429 0.83 3 4 0.0063 88 5.5 0.0 25 52 632 659 626 661 0.88 4 4 0.00032 4.5 9.6 0.1 25 52 815 842 809 844 0.89
Sequence Information
- Coding Sequence
- ATGGACGCAATTTCTACTACTATGCCGCATGTGGAACAAGAGCCTGACATCGAATCGAAAGAAGGGATCATTGATAGAAATATTCCACTCGTAAAACTTACGATgccaagcaaatattttaaatgtggTGAAATATTCGTTGAAGACACACTAAAACTTACTCTAGTCTGTGTGCTTTGTGAAAAGCAATTCACTGAAATGAAATTGTTTGGTGCACACATAACATGTGTACATTTGTCCTCAGAAAAGTTTGAGCCACTTTTGCTAGAGACGGTAAAGgaagaattttcaattgaagaAGATCCCTTTCAGGATGAAAATTCTAATTACGATTCTTCTAGTGCTAGCAATTATGGCGTGCCGGACGGAATGAATGGTGAACTCGCTcatatcaaaGTATCTGCTGCCGACGACAGTGGCATTACGCATCAacgtaaaattgaaaaactccTCTCGGGTTGCAGGTCGTATTTAAATCCCAAGAAATATTTAGAACACGGAAAATGGACAGACTTTTGCGGTAGATGCGGTTTTAAGTTCCAAAATAATCAGGACTATAAGATACATTATAAACTTAGACATACCAATCTCTCGAATGAAGAAAAGGCACAATTAGAGGAAGCGGAAGCTTCAATTGTTTATGTCGCTCATACGTGTCCAATTTGTTATCGTGATCATAAAACTAAAAGAGCATTTGTAAAGCATTTGATAAAAAAGCATTCTCCGGACCctaaaattatgaaattagTCCTGGAAAAAGAATATCGAATCACTCGAGATAAAACTGATCAAGTGCGTGCTGATACAAAAATATTACTAGATTACGTTTCTGATATACTCAATCAAGGCGAATCCCGGGAAAAGGATTACAATAGCAGTACAGTCTTAGGGACGAAGAAAAAATTGGAACAAACgcagaaaaatgtcaaaaagcAACAATCAGAGGTATCTGCTGCCGACGACAATGACAATACATCACAACGTAACACTGAAAAATTCGTTTCGAATTACAGGTCGCATGAAAACCCcaataaatatttacaacaCGGAAAATGGACAGACTTTTGCAGTAAATGCGGTTTTAAGTTCCAAAATAATCAGGATTTTAAGATACATAATAAACTTAGACATACCAAACTCTCGAATGAAGAAAAGTCACAATTAGAAGAAGCGGAAGCTTCAATTGTTTATGTCGCTCATACGTGTCCAATTTGTTATCGTGATCATAAAACTAAAAGCGGGTTCGTAAACCATTTGAAAACAAAGCATTCTCCGGACCCTGAAATTATGAAATTAGTACTAGAAAAAGAATATCGGACCACTCGAGACAAAACTGATCAAACTGATacaaaaatattactaaaatacGTTTCTGATATTCTCAATCCAGGCGAAACCCGGGGGAAGGGTTACAATAGAAGTACAGTCTTTCGGACGAAGGACAAATCGGAACAAACgcagaaaaatgttcaaaagcaAGAATCAGAGGCTGTTGATCCCGAGTCATTTGTGATAAATGAAAATACACCAGCGATTAAGTCTAACGCAATTTCGACCGAACAATTGACAGCAATTACAAACATGACAACTGGTTCCATGCCAAGCGACATGGAAATTGTGAAAGAAGAATTTGAAACGGAAATGGTATCTGCTGCCGACGACAGTGACATTACGCGTCAacgtaaaattgaaaaactctCGAGTTACAATCCGCAGTTAAACCCcaagaaatatttaaaacacgaaAAATGGACAGACTATTGCGGTAAATGCGGGTTTAGGTTCCAAAATAATCGGGACTATAAGATACATTATAAACTTAAACATACCAATCTCTCGAATGAAGAAAAGGCACAATTAGAGAAAGCGGAAGCTTCAATTGTTTATGTCGCTCATACGTGTCCCATTTGTGATCGTGGTTTTACTAAAAAAAGAGGGTTCAAAAAGCATTGGAAAAGAAAGCATAATCCGGACCCTGAAATTATGAAATTAGTACTAAAAAAAGAATATCGGAACACTCGAGACAAAACTGATCAAGGGCGTGCTAATGCAAAAATATTACTAGAATACGTTTCTGATATACTCAATCAAGGCGAATCCCGGGAAAAGGATTACAATAGCAGTACAGTCTTAGGGACGGAGAACAAATTGGAACAAACgcagaaaaatgtcaaaaagcAACAATCAGAGGTATCTGCTGGCGACGACAATGACAATACATCACAACGTAACACTGAAAAATTCGTCTCGAATTACAGGTCGCATGAAAACCCCAATAAATATTTAGAACACGGAAAATGGACAGATTTTTGCAGTAGATGCGGTTTGAAGTTCCAAAATAATCAGGATTATAAGATACATCATAAACTTAGACATACCGATCTCTCGAATGAAGAAAAGACACAATTAGAGAAAGTGGAAGCGTCAATTGTTTATGTCGCTCATACGTGTCCAATTTGTTATCGTGATCATAAAACTAAAAGCGGGTTCGTaaggcatttgaaaaaaaagcattCTCCGGACCCTGAAATTATGAAATTAGTACTAAAAAAAGAATATCGGACCACTCGAGACAAAACTGATCAAGTGCATGCTGATACAAAAATATTACTAGAATACGTTTCTGATATACTCAATCAAGGCGAATCTCAGGAAAAAGATTACAATAGCAGTACAGTCTTTGGGACGGAGAACAAATTGGAACAAACgcagaaaaatgtcaaaaagcAACAATCAGAGGTGTTTTTGAAATAG
- Protein Sequence
- MDAISTTMPHVEQEPDIESKEGIIDRNIPLVKLTMPSKYFKCGEIFVEDTLKLTLVCVLCEKQFTEMKLFGAHITCVHLSSEKFEPLLLETVKEEFSIEEDPFQDENSNYDSSSASNYGVPDGMNGELAHIKVSAADDSGITHQRKIEKLLSGCRSYLNPKKYLEHGKWTDFCGRCGFKFQNNQDYKIHYKLRHTNLSNEEKAQLEEAEASIVYVAHTCPICYRDHKTKRAFVKHLIKKHSPDPKIMKLVLEKEYRITRDKTDQVRADTKILLDYVSDILNQGESREKDYNSSTVLGTKKKLEQTQKNVKKQQSEVSAADDNDNTSQRNTEKFVSNYRSHENPNKYLQHGKWTDFCSKCGFKFQNNQDFKIHNKLRHTKLSNEEKSQLEEAEASIVYVAHTCPICYRDHKTKSGFVNHLKTKHSPDPEIMKLVLEKEYRTTRDKTDQTDTKILLKYVSDILNPGETRGKGYNRSTVFRTKDKSEQTQKNVQKQESEAVDPESFVINENTPAIKSNAISTEQLTAITNMTTGSMPSDMEIVKEEFETEMVSAADDSDITRQRKIEKLSSYNPQLNPKKYLKHEKWTDYCGKCGFRFQNNRDYKIHYKLKHTNLSNEEKAQLEKAEASIVYVAHTCPICDRGFTKKRGFKKHWKRKHNPDPEIMKLVLKKEYRNTRDKTDQGRANAKILLEYVSDILNQGESREKDYNSSTVLGTENKLEQTQKNVKKQQSEVSAGDDNDNTSQRNTEKFVSNYRSHENPNKYLEHGKWTDFCSRCGLKFQNNQDYKIHHKLRHTDLSNEEKTQLEKVEASIVYVAHTCPICYRDHKTKSGFVRHLKKKHSPDPEIMKLVLKKEYRTTRDKTDQVHADTKILLEYVSDILNQGESQEKDYNSSTVFGTENKLEQTQKNVKKQQSEVFLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01044389;
- 90% Identity
- iTF_01044389;
- 80% Identity
- iTF_01044389;