Npan003730.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- -
- Assembly
- GCA_963978885.1
- Location
- OZ022263.1:11549822-11552568[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00011 1.6 11.1 0.3 25 47 166 188 158 191 0.89 2 6 0.18 2.6e+03 0.8 0.0 26 45 195 214 190 221 0.87 3 6 0.0039 56 6.1 0.0 21 48 254 281 244 284 0.90 4 6 0.095 1.3e+03 1.7 0.2 21 45 383 407 380 410 0.89 5 6 0.00048 6.8 9.1 0.1 20 52 410 442 405 444 0.86 6 6 0.013 1.8e+02 4.5 0.0 23 48 441 466 436 470 0.89
Sequence Information
- Coding Sequence
- ATGTGGAGACAACGAATTCAGGATCTGAATATCCAAAATGCACTTGATGCTTtgttgataatttctGGTGACGGTCTACCTGAACATGTTTGCTACGCATGCGCACACACTCTTCTTCAAGCTCTAGACATTCGCAAAAGATGCATTGAATCGGACGCAGTGCTGCACGCTAAAGCTATCGTGGATCAACACTCGCAAGACTCTTTGCAGAAAATCGAATCGGAAAAGAACATTTTCATATGGGAAACGATTGTCCAGACCTACGAACCACCTCCTGAAGATTTCTTCAAAAGCAATACGCACTACGAGCCGGAGCAAAGTAACGGCCTGGATGAAAACGACGATGAAATCTCCGATGAAAGTGATGCCAACGATTtggaaaatgatatttttgataatggAACGTCAGAGATTTTTAAATGTTCCTACTGTCCGAAACAATTTGCCAATAAAACTACATTTTATCGCCATGAGCATTATCATAAGcagaaaaaatgcaaatgtCCCATCTGTCATAATGAATTCACTCATAAACCGAATCTCAAGCGGCATCTTGCCCTCCACAAGGATGGAGAATCATTAAACTGTAATAAGTGCAAAGCAGTGTTCAAAGAGGGCGCTGATCTCTACGAGCATTTAAAGACACATTCGAAGACTGAACCACCGGAAGAATACGTCCATGAATGTAACGTATGTGGCCATCAAACGAAATCGGTGTCCACTTATCGGGCCCATATGAAAAACGAGCATGGCGAAGAAATTGAGAAACCCttcatatgcaaaatatgcactTTGACATTCGCATCGAAACAGGGCCTCCATCgacatattgaaaatattcatcagAATAATCGTAAGAATCTCAGAACTCGCGAAAAGGGCGAGAAAGGTGAAAAGGGTGAAAAAGGTGAGAAAGGTGAAAAAGGCGAGAAAGGTGATAAAATAGTGAAAGCAGATAAAAACGAGAAAAACGGAAAAGGCGACAAGAACTTGTCATGCCCGAAATGCGGCAAGAAATTCTCAGCTAAATTTCATTTGCAAGTGCATCTCCGCACTCATGACCAGGAACGTCGTTTTAAATGTTCGCATTGCCCGAAGTCCTTTACTCAAGCATCCGGTCTAAAAGTCCACACATTAACGCATACCGGTGAAAAACCATTCGCTTGCCGCGTGTGTGGAAAGCGATTCAATCAATACGCACATGTACGTGTGCATTTGCGAACACATTCCAGTGAAAAAGCGCACACTTGCAAAATCTGCAATAAATCGTTCCGAGTACAAGGAAACTTGACCGcacacatggccacacatacaGGTTCGAAACCCTTTGTTTGTGATGTGTGCGGCAAAAGCTATGCTTTCAGTAAAAAGCTTCGGACACATTTCGAAAAGGTTCACAAGACTCAGCGTCAAACGACTTGA
- Protein Sequence
- MWRQRIQDLNIQNALDALLIISGDGLPEHVCYACAHTLLQALDIRKRCIESDAVLHAKAIVDQHSQDSLQKIESEKNIFIWETIVQTYEPPPEDFFKSNTHYEPEQSNGLDENDDEISDESDANDLENDIFDNGTSEIFKCSYCPKQFANKTTFYRHEHYHKQKKCKCPICHNEFTHKPNLKRHLALHKDGESLNCNKCKAVFKEGADLYEHLKTHSKTEPPEEYVHECNVCGHQTKSVSTYRAHMKNEHGEEIEKPFICKICTLTFASKQGLHRHIENIHQNNRKNLRTREKGEKGEKGEKGEKGEKGEKGDKIVKADKNEKNGKGDKNLSCPKCGKKFSAKFHLQVHLRTHDQERRFKCSHCPKSFTQASGLKVHTLTHTGEKPFACRVCGKRFNQYAHVRVHLRTHSSEKAHTCKICNKSFRVQGNLTAHMATHTGSKPFVCDVCGKSYAFSKKLRTHFEKVHKTQRQTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01044139;
- 90% Identity
- iTF_01044139;
- 80% Identity
- iTF_01044139;