Npan029088.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- -
- Assembly
- GCA_963978885.1
- Location
- OZ022264.1:62565806-62567281[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0064 90 5.5 0.1 21 46 208 233 202 240 0.82 2 10 0.1 1.4e+03 1.6 0.1 22 49 237 263 230 267 0.81 3 10 0.0012 18 7.7 0.5 25 45 267 287 253 294 0.86 4 10 0.23 3.3e+03 0.5 0.1 21 46 291 316 287 322 0.83 5 10 0.0024 33 6.9 0.0 21 46 319 344 313 351 0.85 6 10 0.43 6e+03 -0.4 0.1 21 31 347 357 343 373 0.76 7 10 0.00087 12 8.2 0.1 21 44 375 398 361 401 0.87 8 10 0.0095 1.3e+02 4.9 0.1 21 45 403 427 399 434 0.85 9 10 0.0017 24 7.3 0.1 21 44 431 454 426 459 0.87 10 10 0.00034 4.8 9.5 0.4 23 48 461 486 455 489 0.89
Sequence Information
- Coding Sequence
- ATGCTTGAAATGAAAAGCATATTGCTCGCAGATTTTATGGCTGATAGTTGCAGTAGTATTTCAGCTGGTGAAGAAAGTAGCGACTCGAACTATGTTCTAACTGAAGATCAGATCCTCACGGCTGAACAGATCAAGAAGGAACCTGAATTCATTATAGAGGACGACGATGAAAACGAGAAACTGATGCGGTTCTTGCGGGATAAGAATCCGAACGAAGTTTCGAAAGATGATTTAGAGTGGCATAGCTGCATTGTATGTGAAGAAAGGTTTCTCAGCATCGAGGATTTGTCGCTTCACGTACAGACACACGTAAAGAAAGAGGACGAGAGACCGGAAAATATGAGCAAGTCCAAACGCAGGAAGTATGGTATTCGTTCTGAGTATACAGGTTTCACACGAGAAGAACTTTTTCGTGACTACGTACAAATCCAAGTCAGCCTCGACGGTGATGCTAGCTACACTTGCAAGCTTTGCACAGAAAGCGTGTTTCACACCTTAACTGCAATTCGGAATCATATGCGTATCCATGAAAACCCGGTGTACAAAGACCGTAATTGTTCAGTGTGCCATAGGACTTTTTTGCGTCGAGACACGCTCCTAGTGCACATGCGGACGCATACCCGAGAACGTCCTTTCAGCTGTGATATTTGCAATGCAACCTTCGCACATTCCAGTTCACTAGTCTCACACAAACGTATCCACAGCGGTGACAAACCGTACGAATGCGACGTGTGTCACCTTCGATTCAGGGAGTCAGGACAAATGTCGGCACATCGGCGGATTCACTTCGACAAATCATTCGAGTGCCCTCAGTGCAAACAGTTATATTCTTCCTCGAAAAATTTGCGAGCCCATTTGCGAACACACACCGGCGAAAGACCATACCGCTGTGATCAATGTAATAAAGCATTTCGCACATCGACAGCACTAACTCTCCATGCTCGAGTTCATACTGGCGAGAAACCGTACGAGTGCACAATATGTGGATTCGCAACGAAACAGTCCGGATGCCTCAAATCGCATATGAGGACACATACTGGTGAAAAACCCCACAAATGTGATATCTGCGATCGTTCGTACTCTGAAAAGAAGCGACTGGTTACTCACTATCGAACCCATACGGGTGAACGACCGTACAAATGTCCTTTTTGCGACTCGGCCTTCATTCGAAGCGATAATCTGAAAGCTCATGTTAGGACTCATACTGGAGAGCGGCCGTTTAAGTGCGAAATCTGCGACAAGTGCTTTGCACAGAAAACAACTCTACGAACCCATGAACGAGTGCATTCAGGGGAAAAACCGTATGAATGTCCATACTGCAAGCAACACTTCCGCCAATCGGGCATTCTGGTAACACATATGCGAACGCATGACGGAACAGCACCTTATCAGTGCCAGCTGTGCGACAGATCATACAAGCAGAATGGTAATTTGCGGAGACACTATCAGGTCGATCATAATAATGAGCGGTACTAG
- Protein Sequence
- MLEMKSILLADFMADSCSSISAGEESSDSNYVLTEDQILTAEQIKKEPEFIIEDDDENEKLMRFLRDKNPNEVSKDDLEWHSCIVCEERFLSIEDLSLHVQTHVKKEDERPENMSKSKRRKYGIRSEYTGFTREELFRDYVQIQVSLDGDASYTCKLCTESVFHTLTAIRNHMRIHENPVYKDRNCSVCHRTFLRRDTLLVHMRTHTRERPFSCDICNATFAHSSSLVSHKRIHSGDKPYECDVCHLRFRESGQMSAHRRIHFDKSFECPQCKQLYSSSKNLRAHLRTHTGERPYRCDQCNKAFRTSTALTLHARVHTGEKPYECTICGFATKQSGCLKSHMRTHTGEKPHKCDICDRSYSEKKRLVTHYRTHTGERPYKCPFCDSAFIRSDNLKAHVRTHTGERPFKCEICDKCFAQKTTLRTHERVHSGEKPYECPYCKQHFRQSGILVTHMRTHDGTAPYQCQLCDRSYKQNGNLRRHYQVDHNNERY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01376062;
- 90% Identity
- iTF_01044111;
- 80% Identity
- iTF_01044111;