Npan007839.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- Aef1
- Assembly
- GCA_963978885.1
- Location
- OZ022263.1:75330513-75330956[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0099 1.4e+02 4.9 0.1 19 46 15 42 8 45 0.87 2 4 1.7e-06 0.024 16.9 0.1 21 51 45 75 42 76 0.88 3 4 0.0031 43 6.5 0.1 21 51 73 103 71 104 0.87 4 4 9.7e-05 1.4 11.3 0.1 21 46 101 126 99 131 0.90
Sequence Information
- Coding Sequence
- ATGTCTCGTGCATTAAGCAACACAATGGCTATTACTAACAACAGCACATTGGATAAACCGTTCCAGTGCAGTGTGTGTGAGAGGCGCTTTAGACAATTAAGTACCCTGACGAATCACATAAAAATTCATACGGGAGAAAAGCCCTACAAATGCCCTGTTTGTGAGAAACATTTTCGCCAGTCAAGTACTTTGactaaccatttaaaaatacaCACGGGAGAGAAACCATTCGATTGCACTTATTGTAGGAAGCAATTCCGACAGCTGAGCACACTTACCAATCATCTAAAAATCCATACAGGCGAAAAACCTTTCGAATGTATTATTTGCAAAAAGCAGTTTCGTCAGTCTAGTACACTTAATAATCATATTAAAATTCACATGACCGACAAACTTTACCTGACTTGTACACCGGAAATAAAAGCAGAAGTAGAAGAAGCATGA
- Protein Sequence
- MSRALSNTMAITNNSTLDKPFQCSVCERRFRQLSTLTNHIKIHTGEKPYKCPVCEKHFRQSSTLTNHLKIHTGEKPFDCTYCRKQFRQLSTLTNHLKIHTGEKPFECIICKKQFRQSSTLNNHIKIHMTDKLYLTCTPEIKAEVEEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00203877;
- 90% Identity
- iTF_01044246;
- 80% Identity
- iTF_01044246;