Npan022409.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- kipf
- Assembly
- GCA_963978885.1
- Location
- OZ022263.1:215366363-215372595[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.004 56 6.1 0.2 14 46 215 247 207 253 0.81 2 6 0.00017 2.4 10.5 0.1 22 44 279 301 274 309 0.86 3 6 0.1 1.4e+03 1.6 0.0 21 44 306 329 302 333 0.88 4 6 6.3e-05 0.88 11.9 0.0 21 45 334 358 323 367 0.81 5 6 0.015 2.1e+02 4.3 0.0 16 45 357 386 355 393 0.90 6 6 0.07 9.9e+02 2.1 0.0 21 44 419 442 411 446 0.82
Sequence Information
- Coding Sequence
- ATGGAATATAGAACAGATAATATTTGCCGGACATGCTTGGATGAAACGGAAAATTTGCGAAACCTTTTTCGTGACGGACAAGTTTGTGGAGAAACAACTACGCTGTCGAATATGTTACACAAAATTTCCGCACTagaagtgAATCAAAATGATCCGCTGCCACAGAACATATGTTCAAAGTGTGTAGTTTCACTAAGCAAAGCGTATATTTTTCGCAGGACCTGCATTGAATCCGAATCATGCTTACAAGAAAAACTCAGAGCCAAACAAGCTGATGAAGATGATATCATTGGCACATTCTACTTTTATGATGAAACAGAAACAGAAAATGTTGTAGAGGAGTGCCATGTGCAAACAATGTATGAAAGTGGTGATGTGAAACAAGAAAATGTTACATACGAGTCGAACTCAGCTTGCGAAGAAGATGAAGAAGTGATTGAAGATGGTTCTTATGAACAATTGGAGGTATCCGAAGATAATGATCCGAtcgacgaagaagaagaagaatacgGTACGCAATTGGACCATCAAACTTTATCAATTGAGGTGCAAGAAGATATTCAAAAGTCTCCAAAAGAACCAGTAACTTATACAGTAGAGCTGAGCGATAGTGTTGAAAACAAATCGAACAGCCAAAAGACACGTAAACGTTCCAAGCGTTATTCGGGACCACCGTATAAGTGTGAAATTTGTGGCAAAGTGCTGAGTAATCACAGTTCATACAAATATCACATGCAGCTCCATTCCGATAAGACACCATTTTTATGCAGTGAGTGTGGCGAAGGTTTTAAAACTAGAAACGCATACGAAGGACATATGACAACGCATGATAAAAATAATCCGAACAAATGTAACGTATGTGGTAAGGTTTACCGACAAGCCAGCTCCTTGCGTTCCCACATGCTAACGCACACTGGCGAAAAGCCCTTTCAGTGTCGTGTTTGCGGCAAAGGTATAACCCAGAAGTCCGGATACAAGAAACACATGTTGACGCATACAGGAGAAAAGCCACATACGTGCGATATATGTGGCAGCTCGTTTAGATTTTCAAGCAACTTGATAACGCATCGCAGGCGACATACAGGAGAGAAACCTTACGTATGTACTACTTGTGGAAAAGCCTTTGTAGGTGGCGAACAATTGAAGCGCCATTTGGCTACACACTCGAAAGGGAAACAGTACAAATGTGATATATGTCCACAGGTGTTTAATCGAAAAGGCTCATATCATTTACATCGCAACACGCAACACTCGAATGAAAAGAAATTTGCTTGTAAAATATGCGGTATTAGTTACGCACAAATGAAAGGACTTATTCGTCATATGCTAGTTCATAAAGATTGCTACGAAGATGTTGAAACTTTAGAGCTACAAAACGATAATAATGAAGCAATTTAA
- Protein Sequence
- MEYRTDNICRTCLDETENLRNLFRDGQVCGETTTLSNMLHKISALEVNQNDPLPQNICSKCVVSLSKAYIFRRTCIESESCLQEKLRAKQADEDDIIGTFYFYDETETENVVEECHVQTMYESGDVKQENVTYESNSACEEDEEVIEDGSYEQLEVSEDNDPIDEEEEEYGTQLDHQTLSIEVQEDIQKSPKEPVTYTVELSDSVENKSNSQKTRKRSKRYSGPPYKCEICGKVLSNHSSYKYHMQLHSDKTPFLCSECGEGFKTRNAYEGHMTTHDKNNPNKCNVCGKVYRQASSLRSHMLTHTGEKPFQCRVCGKGITQKSGYKKHMLTHTGEKPHTCDICGSSFRFSSNLITHRRRHTGEKPYVCTTCGKAFVGGEQLKRHLATHSKGKQYKCDICPQVFNRKGSYHLHRNTQHSNEKKFACKICGISYAQMKGLIRHMLVHKDCYEDVETLELQNDNNEAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01044146;
- 90% Identity
- iTF_01044146;
- 80% Identity
- iTF_01044146;