Npan027545.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- MBD2
- Assembly
- GCA_963978885.1
- Location
- OZ022264.1:44422094-44430352[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-09 6e-05 24.7 0.0 2 64 7 73 6 83 0.85 2 2 0.00024 4.1 9.3 0.0 29 74 128 181 96 184 0.87
Sequence Information
- Coding Sequence
- ATGAATATTTCAATAGAACGTAGGAAACCAGAATGCAATATTCCACCGCCTAAAGGATGGCAACACAGAGAAGATGGTCAAAGGAAAGGAAGCGTTGCTCCGGGAAAAGTTGATATTTACTATTATGGTCCCGGTTTTGCTGGTAAAAAACCAGTCGATAACAAATCACAACTAGTTCGTCATTTGAACGATTCGTTAGATGTAACACCGATCGATATTTCAAGCAACAAGATTTTGTCAAATACTCAACCAATATCATTGAATCGTAATGCATCCTCCAATCTGTATAAACGCAAACTATCAACAATTGGATCGACTAGCCTCTATAGTCCTGGCGGCACCACATCAACACTTCGTCATCATCTTGAATTCAGtcgTGGGCTCAGAACGGACATTTCACTAGTACCTCCAATTCGTCAGACCGCTTCGATTTTCAAGCAACCCGTTACAGTTCACAAGACACAGGAGAGCAAAGTCAAGCACGACTTGAAGCACGGCACCCAAGAAAAACCGCGACAACTTTTCTGGGAGAAGCGCTTAGAAGGACTGCGATCCTGTGATGTTAGCGGAATGGAATTCGGGCCGATAGACTTACCAAAGGGAATTAAGCCAGTTGGACCGAACGTCAACGAGCATACCTTACTACAGTCTGTTGCTACGGCACTACATGTATCCAACCAGCCAGTGACCGGCCAGATGACGGCAAAGCAGATTTTATGCGCGAACACTGGAGTATTTTTAAATCCTGATCAACCTTTGATGCATTCAGTGAATGTTACTGAGGACGATATTCGGCGACAAGAGGATCGAGTTACTTTCGCCAGACGTAAACTTCAAGAAGCGCTCAAACCATAA
- Protein Sequence
- MNISIERRKPECNIPPPKGWQHREDGQRKGSVAPGKVDIYYYGPGFAGKKPVDNKSQLVRHLNDSLDVTPIDISSNKILSNTQPISLNRNASSNLYKRKLSTIGSTSLYSPGGTTSTLRHHLEFSRGLRTDISLVPPIRQTASIFKQPVTVHKTQESKVKHDLKHGTQEKPRQLFWEKRLEGLRSCDVSGMEFGPIDLPKGIKPVGPNVNEHTLLQSVATALHVSNQPVTGQMTAKQILCANTGVFLNPDQPLMHSVNVTEDDIRRQEDRVTFARRKLQEALKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -