Npan067879.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963978885.1
- Location
- OZ022265.1:142910431-142920226[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.3 2.5e+04 -3.6 3.1 35 76 83 125 48 140 0.62 2 3 2.3e-113 2e-108 364.5 34.2 1 299 189 473 189 474 0.95 3 3 0.096 8.1e+03 -2.0 4.1 220 244 502 526 478 547 0.46
Sequence Information
- Coding Sequence
- atggaaaatatcaACAGTGCTTTGAGCGATGCCAAGTGTAATGAGCAAACAGCTAAATCTACTACAACCGAACCGAATAATAATGTTCTAAAGGACTCAAAAAAATGTGCGACAAATAATAACGATGGCGAGCAAATAATTGATAACGATAATGATGAAGTGTTCGATTTCAGTGATAACGATTTCAATTCGGAGAGTGAGGAAACTTCGACAATTCATGATCCTTCGGAtagtgaaatgaaaaatgaagaaattatgTCCGAAAATCATATCAAAGAAATTTCGCAAAATGTTGTAAATGATGCTCAAAATTTGACTGTCATCGAGAGCCAAGAGACGAAGTCAAGCCGAACGGAATTTTCTACTGCTTCCAGTGAAACCAAAGATAATGGTGGTGATGacaatattattgaaaataaatatgataCGCTGAACAGCACGACGACCGATCCAAGTAGTGCAGAGTGTCTGGACGAGTGTGTTGCGGATGATGACGACAGTGTGTTTCAGAGCGATGAAGATCCAGACTTGCTGGTTACGTTCTTGGATAAAGCCAATGAAATTGCCGAGGCAAGATTAGCGGCGCGTCGTCAAGCGCGTGCAGAAGCACGCGAAATTCGAATGCGAGAGCTGGAGCGACAACAGAAAGAACAGGAACAAAATGCCGACAGGGTATTCGATATGCAAACAGCGGCAGGAATCGATCCACTGTCGCGATCCCGACATGGCTTGTCAACAAGTTCGGCACGAGGTAGCTCGTCGCTGTCTTCGCGACGAAGCAGCGAGGATTCACTGGAGGAGGAAGGTCGAAGTTTACGAGATATTCGGCATGAACTTAAGGATGTCGAAGAAAGATTTCGAAAGGCCATGATTGCAAATGCTCAGCTGGACAATGAACGAGCATCACAATCGTATCAGATACAACTACTTAAAGATAAACTCGAAGAAATGGAGGAAACATTTGCCCAGCTGCAGCGTGAATACAAGGAGAAGTGTCGCGATCATAATGCTTTAAAACGAAATTTAGATAAAGTCGAGGAAGAATTAAAGTTAGTACGCGGACAGTTAGAAGAACGAGATACTCTCATAGCCGAACAAGGTTTAGTTATAGTCATGATAGAAAATGAAGATGGCTCCGACGCCAAACGTGCCCTAGTCACTGTAGATAACGCACAACTATTAGGATCAGTTCAAGGCTCATTAGATGTTCGGCTTAAGAAATTCACCGAAGAGAAACAAGAGCTGCAAAGGGAAGTTAATAATCTGCAACAACAATTGTCCGAATTAAAATCACAACGGAAAGGCGGTTCTATGAATGGTCCAATTGGCAACGACGATGAATGGGATGCGCAAAGAGAAGCAAATAAACTGATATCGGAATATAAATACAAGCTGCAAAAAGCTGAACAGGAAATCGCTAGTCTTCAAGCAAGCTTAGCGCGATCGGAAACTCAAGTTATACGGTATAAGAGTACGGCGGAAGCAGCAGAGAAAGCTGAAGctgaattgaaaattgaacGGAGAAAACTGCAGCGAGAGAACCGCGAAGCAATGGAACGTTTAGAAGAGCTGGAAACATCTAACAATCATCTACTTAAGCGCTTGGATAAACTGAAGAATGCCAAGAGTGCGTTACTCAAAGACCTCTGA
- Protein Sequence
- MENINSALSDAKCNEQTAKSTTTEPNNNVLKDSKKCATNNNDGEQIIDNDNDEVFDFSDNDFNSESEETSTIHDPSDSEMKNEEIMSENHIKEISQNVVNDAQNLTVIESQETKSSRTEFSTASSETKDNGGDDNIIENKYDTLNSTTTDPSSAECLDECVADDDDSVFQSDEDPDLLVTFLDKANEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLSRSRHGLSTSSARGSSSLSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEETFAQLQREYKEKCRDHNALKRNLDKVEEELKLVRGQLEERDTLIAEQGLVIVMIENEDGSDAKRALVTVDNAQLLGSVQGSLDVRLKKFTEEKQELQREVNNLQQQLSELKSQRKGGSMNGPIGNDDEWDAQREANKLISEYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -