Npan002904.2
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- bab1
- Assembly
- GCA_963978885.1
- Location
- OZ022263.1:46590-48626[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.8e-17 6.4e-14 53.5 0.0 1 43 28 71 28 73 0.95 2 3 8.3 6e+03 -0.8 0.0 10 22 145 156 145 158 0.86 3 3 1.3 9.1e+02 1.8 0.5 2 15 165 178 164 192 0.78
Sequence Information
- Coding Sequence
- ATGTGGCAAAAATGTTGGAACACAAATCAAAACCTAATGCATCATTTACGGTTCCGAGAAAGAGGACCGTTGAAATCATGGCGACCCGAGACAATGGCTGAAGCGatttttagtgttttaaaagaaggtTTATCTCTGTCGCAAGCGGCTCGGAAATATGACATTCCGTATCCGACATTCGTGCTGTACGCTAATCGTGTGCACAACATGCTGGGACCTTCAATCGATGGCGGAACGGACCTACGACCGAAAGGAAGAGGCAGACCACAACGGATCTTATTAGGAATTTGGCCTGACGAACACATCAAGGGTGTCATTAAAACAGTTGTTTTCAGAGAtgcaaaagaaattaaagaCGATGGAATGCATCTGCAATATGGTCGACAGTCGCCCGTTTTTCCATTCCAAGACGGACAGATGAATTACTCGGGAGCAGCCTGCGCAAATGGACTTTCTCAGCAAACCGCAACAACAAATTCGGATTCGATGTCACCAGAAGCGACAGCTGCGGCAGTGGCTGCTGTTGCGCATGGTATACGGCAACAGATGCAAATGGTTGCAGCAGCCCAGCATCACACCGACCCGCAGGGCACCGGGCTTTTCAACCTACCCTCGCACATGCACACCAACAATGGAGGCATCCCTATACCTAAGCAAAACTCTCCAGCCTCCAGCTCGCAGAGGCATAGTTCGCCATCAACGGCAGCGATTTCTAACCCAGCGGCTATGAGCATGGGGGGAATTCCTGGTATTCACATTATTCCCGGACTAGGCTCCAATTCCAGTAATCAAAATAGTGGATCAACGAATCCTGCTTATACTTCCAACACTCCCAGCCAGCAAACTTCGTCCACGCTGAACCCATCGTCGGCCCCGAGTGGATCGGGAAGCCTTTCACGGAATAACTCACCTACGGCTGCCGCCCACGACTTACGCATCAACAGCCCGGACGAGATTCCTCTGAACTCGCCTATAGAACTAGCATTGGAGCCTGCAGTAAATCTTGCCGTCGGCGTAAGCGGAATGTCGTATAAGCCTTCGCGAGGATATTCTTCGCCTAGACCTGAGCACCTATTCCAGGAGGATATTTCAGACCTAGTTGGTCGGCCTGCACGTAGTCAGCCAATGTCGCACTTCAAGGAACCATCGGGGAGCATAAAACTCGAGCCAGTAGCGGACTGTCGGTCTGATTAG
- Protein Sequence
- MWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKEIKDDGMHLQYGRQSPVFPFQDGQMNYSGAACANGLSQQTATTNSDSMSPEATAAAVAAVAHGIRQQMQMVAAAQHHTDPQGTGLFNLPSHMHTNNGGIPIPKQNSPASSSQRHSSPSTAAISNPAAMSMGGIPGIHIIPGLGSNSSNQNSGSTNPAYTSNTPSQQTSSTLNPSSAPSGSGSLSRNNSPTAAAHDLRINSPDEIPLNSPIELALEPAVNLAVGVSGMSYKPSRGYSSPRPEHLFQEDISDLVGRPARSQPMSHFKEPSGSIKLEPVADCRSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00324239;
- 90% Identity
- -
- 80% Identity
- -