Npan006592.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- fru
- Assembly
- GCA_963978885.1
- Location
- OZ022263.1:57193647-57194997[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.2e-13 3.8e-10 41.5 0.0 3 44 249 290 247 291 0.90 2 3 0.81 5.9e+02 2.4 0.0 28 38 320 330 319 336 0.88 3 3 3.7e-16 2.7e-13 51.6 0.0 3 39 355 390 353 393 0.94
Sequence Information
- Coding Sequence
- ATGCACCATCTCAAATGGATGACCCATTCCGAAACCATAATGGACTTGCAGCGAAGTTTGCACAATGACGAGGCCTCGTGCGATGTACTCGTAGCGTCCGACAAAGGCATTCAGTTTAGGGCTCATCGATTCCTGCTATGTTTCTGTAGTgattatttcaaagaaatgttTCGAGACGTTCCGATGAATCAGGAAGTGACGATTATGATACCGGAAGTTCGTCCTAGTATACTGAAAAcgattttggattttatttatattgggGAGGTCTGTGTCTCGTCGACCGACATGTCAGACTTTTTCAACACGTTTAATTTGCTGGAAATAAAGAGTGGAATAAATTGTGAGAGACGAATTGTACCGAAACAGGAAACGTATCAGGAAGAATTGAGTATTGAACCCGTAGATGATATTGAGATTGAAGTGCCGCAATCAGGGACGGCTGGTAAATCAGAGGAAACAGATGGAATGCAATCAGAAAAGGAACTTGAGTATTTAGAAGTATACAGCTCTCACGAAAAATTCGCTCAATATGCCATGGAGCAGGCAAACAATGAATACATTCTTGCAGAAACTAGTGAACCAAGCTTTGTCTTGCCGGTTGAAAAGACCCACAATGAAATTACAATTAACGCAGATGAAGTGAGTAGTGCGCACGAAACCGAAACCGAGCTACCAGAAAAATTCAAACCcgacaaaaaaatatacaaagcaGAAGAGCTACCAGGATTCTCATCGCGTGGCGAGGCCTTCGACGCAGCAATACAAGATGTACTGCATTTCGGCGTGAGTCTGCAGAAAGCCGCGACAAAGTATAATATCTCGAAAACAGTTCTTTGGCGACGTGTGCGAAAGAACAGCGCCTATAAAACAGAACGAGAACACCCAATGTTGGATTCTGCAATTAAAATGTTGGAGAAAGGCGAATCGCTAAAAACAATCAGCCAAACCATTAAAATACCCATATCTACGCTGCATCGACACAAGGTACGCTTATTACAGGAAGGTCGTCTTCCACAGCACATACAGGTCAAGCGTCGAGACTCCAAAGACAATCTCAAAGAACGGCTGGCAGACGCGATAAATGCCTGCTCTCGAGGTATGTCCCAAAACCAGGCGGCAAACATTTATTCTGTGCCGAAATCGACACTTTGGCGACATTTGCAGAAACAAACATGCAAAATCGAAGTTCAAAGCTGCGACGAAATGATATCTAGTTAA
- Protein Sequence
- MHHLKWMTHSETIMDLQRSLHNDEASCDVLVASDKGIQFRAHRFLLCFCSDYFKEMFRDVPMNQEVTIMIPEVRPSILKTILDFIYIGEVCVSSTDMSDFFNTFNLLEIKSGINCERRIVPKQETYQEELSIEPVDDIEIEVPQSGTAGKSEETDGMQSEKELEYLEVYSSHEKFAQYAMEQANNEYILAETSEPSFVLPVEKTHNEITINADEVSSAHETETELPEKFKPDKKIYKAEELPGFSSRGEAFDAAIQDVLHFGVSLQKAATKYNISKTVLWRRVRKNSAYKTEREHPMLDSAIKMLEKGESLKTISQTIKIPISTLHRHKVRLLQEGRLPQHIQVKRRDSKDNLKERLADAINACSRGMSQNQAANIYSVPKSTLWRHLQKQTCKIEVQSCDEMISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01375646;
- 90% Identity
- iTF_01043990;
- 80% Identity
- iTF_01043990;