Basic Information

Insect: Nematopogon swammerdamellus
Gene Symbol: -
Assembly: GCA_946902865.1
Location: CAMPPV010000315.1:1-26105[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0014 25 6.0 0.1 26 47 10 31 3 34 0.87

2 7 0.00039 6.7 7.8 0.0 26 47 89 110 81 115 0.85

3 7 0.0011 18 6.4 0.0 26 47 229 250 221 255 0.85

4 7 0.0011 18 6.4 0.0 26 47 369 390 361 395 0.85

5 7 0.21 3.5e+03 -0.9 0.0 26 45 465 484 459 489 0.86

6 7 0.11 1.8e+03 0.0 0.0 26 48 557 579 555 584 0.81

7 7 0.00012 2.1 9.4 0.4 20 49 610 639 593 643 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0014	25	6.0	0.1	26	47	10	31	3	34	0.87
2	7	0.00039	6.7	7.8	0.0	26	47	89	110	81	115	0.85
3	7	0.0011	18	6.4	0.0	26	47	229	250	221	255	0.85
4	7	0.0011	18	6.4	0.0	26	47	369	390	361	395	0.85
5	7	0.21	3.5e+03	-0.9	0.0	26	45	465	484	459	489	0.86
6	7	0.11	1.8e+03	0.0	0.0	26	48	557	579	555	584	0.81
7	7	0.00012	2.1	9.4	0.4	20	49	610	639	593	643	0.87

Sequence Information

Coding Sequence: GACGGGCCGAAGTCACTCAGCTCGTTCCCGTGCGAGCTCTGCAGCAAGGTGTTCCGCTGGAAGACATCGCTGCGCAAGCACGCCGAGCTGCACCGCATACAGTACGAAGTCACTCAGCTCGTTCCCGTGCGAGCTCTGCAGCAAGGTGTTCCGCTGGAAGACATCGCTGCGCAAGCACGCCGAGCTGCACCGCATACAGGCCGGCGAGAAGGAGACGCCGTTCTGCGACGCGTGCTGGTCAGTACGAAGTCACTCAGCTCGTTCCCGTGCGAGCTCTGCAGCAAGGTGTTCCGCTGGAAGACATCGCTGCGCAAGCACGTCGAGCTGCACCGCATACAGGCCGGCGAGAAGGAGACGCCGTTCTGCGACGCGTGCTGGTCAGTACGAAGTCACTCAGCTCGTTCCCGTGCGAGCTCTGCAGCAAGGTGTTCCGCTGGAAGACATCGCTGCGCAAGCACGCCGAGCTGCACCGCATACAGGCCGGCGAGAAGGAGACGCCGTTCTGCGACGCGTGCTGGTCAGTACGAAGTCACTCAGCTCGTTCCCGTGCGAGCTCTGCAGCAAGGTGTTCCGCTGGAAGACGTCGCTGCGCAAGCACGCCGAGCTGCACCGCATACAGGCCGGCGAGAAGGAGACGCCGTTCTGCGACGCGTGCTGGTCAGTACGAAGTCACTCAGCACGTTCCCGTGCGAGCTCTGCAGCAAGGTGTTCCGCTGGAAGACGTCGCTGCGCAAGCACGCCGAGCTGCACCGCATACAAGCCGGCGAGAAGGAGACGCCGTTCTGCGACGCGTGCTGGTCAGTACGAAGTCACTCAGCACGTTCCCGTGCGAGCTCTGCAGCAAGGTGTTCCGCTGGAAGACGTCGCTGCGCAAGCACGCCGAGCTGCACCGCATACAGGCCGGCGAGAAGGAGACGCCGTTCTGCGACGCGTGCTGGTCAGTACGAAGTCACTCAGCTCGTTCCCGTGCGAGCTCTGCAGCAAGGTGTTCCGCTGGAAGACGTCGCTGCGCAAGCACGCCGAGCTGCACCGCATACAGGCCGGCGAGAAGGAGACGCCGTTCTGCGACGCGTGCTGGTCAGTACGAAGTCACTCAGCTCGTTCCCGTGCGAGCTCTGCAGCAAGGTGTTCCGCTGGAAGACGTCGCTGCGCAAGCACGCCGAGCTGCACCGCATACAGGCCGGCGAGAAGGAGACGCCGTTCTGCGACGCGTGCTGTCTGCGATTCACAACGACGGCCAACCTACAGAAGCACGTGAAGACAAGCTCCAAGCATCAAATCCAGCTCAAACTGAGGAACCTGAAGGAACTGCTGAAGGACGAGCCCGAGGAGCGTAAACTGGCGCCCATAGAGGCGATCAAGACGAGCGTCAAGAACGCGCTGAACAATTTCGCCTGCCCGCACTGCGACAAGAAGTTCCAGTGGAAGGGAAACTTGCTGAGGCATATACAGAGCCATAAGGCGCGCGCAAACGGGGAGCTGTACTGCGCGCCGTGCGACCGCAAGTTCTCCTCGCTGGCCACCTACCAGCAGCACATGAAGATCAGCAAGAAACACGTCACCGAGAACGACTTCCGATACATGTGCAGCGAGTGCGGACGCAAGTTCGCGAACAAGACTCGCCTGAAGGACCACGTGGAGTGGGAGCACCTCAAGATATACTCGCACAAGTGTCCGCTCTGCGAGAAGGTGTTCAAGAGCAACACGTCGCTGTACCTGCACAACCAGGTCGTGCACCGCAAGGAGAACGGCGACCACCTGTGCGATCACTGCGGCAAACCTTTTCCTAACCGCGCGAAGCTTCGCAGTCACATCACCGCGATGCACACGTCCGAGCAGCCGTACAAGTGCAAGCTGTGCGCGGCCACCTTCTCCTGGCACTCGTGCCTCTCCAGGCACGTCAAGGTGGTGCACCACAAGATCAAGGCGAAGAGGAAGCGCAAGAACAAAGCCGACCTCCCCGCACCGCACCTCCCGCTGGGCCCCCCCGTCATCGGCAGCTGA
Protein Sequence: DGPKSLSSFPCELCSKVFRWKTSLRKHAELHRIQYEVTQLVPVRALQQGVPLEDIAAQARRAAPHTGRREGDAVLRRVLVSTKSLSSFPCELCSKVFRWKTSLRKHVELHRIQAGEKETPFCDACWSVRSHSARSRASSAARCSAGRHRCASTPSCTAYRPARRRRRSATRAGQYEVTQLVPVRALQQGVPLEDVAAQARRAAPHTGRREGDAVLRRVLVSTKSLSTFPCELCSKVFRWKTSLRKHAELHRIQAGEKETPFCDACWSVRSHSARSRASSAARCSAGRRRCASTPSCTAYRPARRRRRSATRAGQYEVTQLVPVRALQQGVPLEDVAAQARRAAPHTGRREGDAVLRRVLVSTKSLSSFPCELCSKVFRWKTSLRKHAELHRIQAGEKETPFCDACCLRFTTTANLQKHVKTSSKHQIQLKLRNLKELLKDEPEERKLAPIEAIKTSVKNALNNFACPHCDKKFQWKGNLLRHIQSHKARANGELYCAPCDRKFSSLATYQQHMKISKKHVTENDFRYMCSECGRKFANKTRLKDHVEWEHLKIYSHKCPLCEKVFKSNTSLYLHNQVVHRKENGDHLCDHCGKPFPNRAKLRSHITAMHTSEQPYKCKLCAATFSWHSCLSRHVKVVHHKIKAKRKRKNKADLPAPHLPLGPPVIGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01042946;
90% Identity: iTF_01042946;
80% Identity: iTF_01042946;