Nswa003914.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nematopogon swammerdamellus
Gene Symbol
-
Assembly
GCA_946902865.1
Location
CAMPPV010000111.1:374882-392668[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0017 0.13 13.7 1.3 1 23 231 253 231 253 0.99
2 16 0.018 1.4 10.5 1.4 1 23 260 283 260 283 0.96
3 16 3.8e-05 0.0029 18.9 3.1 1 23 314 337 314 337 0.98
4 16 0.019 1.4 10.4 0.2 1 23 341 364 341 364 0.92
5 16 0.11 8.2 8.0 0.2 2 20 376 394 376 396 0.94
6 16 0.94 71 5.0 0.6 3 23 410 431 410 431 0.91
7 16 0.096 7.3 8.2 1.0 3 15 486 498 485 504 0.80
8 16 0.096 7.3 8.2 1.0 3 15 517 529 516 535 0.80
9 16 0.096 7.3 8.2 1.0 3 15 548 560 547 566 0.80
10 16 0.086 6.5 8.3 1.0 3 15 579 591 578 597 0.80
11 16 0.096 7.3 8.2 1.0 3 15 610 622 609 628 0.80
12 16 0.096 7.3 8.2 1.0 3 15 641 653 640 659 0.80
13 16 0.0079 0.6 11.6 1.8 3 23 672 692 671 692 0.97
14 16 5.9e-06 0.00045 21.4 0.9 1 23 698 720 698 720 0.99
15 16 3.7e-05 0.0028 18.9 0.5 1 23 726 748 726 748 0.98
16 16 6.8e-06 0.00052 21.2 0.1 1 23 754 777 754 777 0.98

Sequence Information

Coding Sequence
ATGTGTGACGTGAGAGTGTGCGTCGCGTGCCTCGCTACCGACGTGAGGATGTACAGCATGAGCGCCAGCAGTCTGCTGCAGCCCTACCAACTGCTCACAGGAAATGAGTTCCAGACGATAGATAAAATGCCTCAGAAGTTGTGCTGGGAGTGTGCGGCACTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGAGAGAGCCTATCTACTGCTGCAGGACATCTACAACCAACATGATGAGAAGTTGTGCTGGGAGTGTGCGGCACTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGAGAGAGCCTATCTACAGCTGCAGGACATCTACAACCAACATGATGAGAAGTTGTGCTGGGAGTGTGCGGCACTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGAGAGAGCCTATCTACTGCTGCAGGACATCTACAACCAACATGATGAGATTGAAATTGAAAGAAAGAACAAGGCGAAAAAGAAGGAAAAGAAGAAGAAGAAGAATAAGAAGAAGCAGATAAAGGAACTAAAGAATGGGGTGAAGGTGGACGTTAAAAGAGAGCCGTTGAATAAGAAGGTGGATTTTGCAGATTTTGCCACAGCTGTTATTCTTACACAGGAACAACAAATGGAAGAGATCAGAAAGAGACGGGAGACAGCGAGCTATAAGGAGGCGTTCTTCAAGTGCTCGCTCTGTTACAAAGGGTTTGTCAATGACAAAGCGTATGGCAATCATATGAGAAAGCACGATCCGGCGACGGGCGAATATCAGTGCGACGTGTGCAAGAGCAGGTTCAAGAAGCGTTACTACGTCGCGGACCACATATATAAAGTACACATGACCAAATATGTGTGCAAGTTCTGTCCGTTTGTCAGTCAGTGCGTGTACCAAGCCAGCACACACTACAAGTGGCATAAAGGAGTTGTGTACAAATGTAACATTTGCACGGAGCAATTCACCACCAAGTCAACGTTCCTGAGTCACAGACGTATTAAACACGCGTCGGAGCATGTGTGTCCTGCTTGCGGAGAGTCATTCGTCAGCAGACTAGGTCTACTGCAGCATAATAGCAGGCTGCATAAGAACGCGTCAGCATCGGAGGCAAGCGGGCCCTATTGCGAGGAGTGCAAGGTGCAGTTTGCGTCGCACGAGGCGTTCACCAAGCACACCGTGATATCACCACGACACGCCGCTGATCCTCAGTtacaGAGCGGGTGCCGCGACTGCGGCGCGACGTTCGGCTGCGCGAAGGAGCTGCGCGCGCACCGCGCCGCGCGCCACCGCCGGCTGAAGGTGCGCGCGGCGCGCCGCGGCGGCCACGCCGACGGATACCCGGTCAAGTGCGCTCAGTGTTCGGAGATAATGGAGAGCGCACGCCGGTACTGGCAACACTTCCGCCGGTCGCATCCCACAGAGCAGTACCCGTCCAGCAAGCCGGCTATCTGCGAGTACTGCGGCAAGGGTTTCAAGAGATACTGGCAACACTTACGCCATTCGCACTCCACCGAGCAGTGTACCTCCAGCAAGCCGGCTATCTGCGAGTACTGCGGCAAGGGTTTCAAGAGATACTGGCAACACTTACGCCATTCGCACTCCACCGAGCAGTGTACCTCCAGCAAGCCGGCTATCTGCGAGTACTGCGGCAAGGGTTTCAAGAGATACTGGCAACACTTACGCCATTCGCACCCCACCGACCAGTGTCCCTCCAGCAAGCCGGCTATCTGCGAGTACTGCGGCAAGGAGTTCAAGAGATACTGGCAACACTTACGCCATTCGCACCCCACCGAGCAGTACCCCTCCAGCAAGCCGGCTATCTGCGAGTACTGCGGCAAGGGGTTCAAGAGATACTGGCAACACTTACGCCATTCGCACTCCACCGAGCAGTACCCCTCCAGCAAGCCGGCTATCTGCGAGTACTGCGGCAAGGGGTTCAAGAGATACTGGCAACACTTACGCCATTCGCACCCCACCGGGCAGTATACCTCCAGCAAGCCGGCTATCTGCGAGTACTGCGGCAAGGGGTTCAAGTGCAAGTCGGTGCTTGCCTACCACCGCAACACGCACACCGGCAAGCGTAACTACACGTGCAGCGTCTGCCCGAAGACATTCTTCACTCCGCAGAACCTGGACAACCATCTCAAGTCGCACTCGGACAGCCGGCCGTACGTCTGTGACTTGTGCAGCAAGGGCTTCAAGTTTAGTGTGGCCCTGCTGCGACATCGAAGGATCCACACGGGTGAGAAGCCGTACGTTTGCGACGTTTGTGGAAAGGGCTTTACGGACTCGAGCGGTCGGAAGGTCCACGTGCGAACCGTTCATCTCAAGGAGCCGACGCCGTACGTCAGCAAAGCGCGGCTGGAGAAACGACGCCAAGCTGACACGGCCAAGAGCACGCAAGAACAAAACTAG
Protein Sequence
MCDVRVCVACLATDVRMYSMSASSLLQPYQLLTGNEFQTIDKMPQKLCWECAALVNKFNLFRHKCERAYLLLQDIYNQHDEKLCWECAALVNKFNLFRHKCERAYLQLQDIYNQHDEKLCWECAALVNKFNLFRHKCERAYLLLQDIYNQHDEIEIERKNKAKKKEKKKKKNKKKQIKELKNGVKVDVKREPLNKKVDFADFATAVILTQEQQMEEIRKRRETASYKEAFFKCSLCYKGFVNDKAYGNHMRKHDPATGEYQCDVCKSRFKKRYYVADHIYKVHMTKYVCKFCPFVSQCVYQASTHYKWHKGVVYKCNICTEQFTTKSTFLSHRRIKHASEHVCPACGESFVSRLGLLQHNSRLHKNASASEASGPYCEECKVQFASHEAFTKHTVISPRHAADPQLQSGCRDCGATFGCAKELRAHRAARHRRLKVRAARRGGHADGYPVKCAQCSEIMESARRYWQHFRRSHPTEQYPSSKPAICEYCGKGFKRYWQHLRHSHSTEQCTSSKPAICEYCGKGFKRYWQHLRHSHSTEQCTSSKPAICEYCGKGFKRYWQHLRHSHPTDQCPSSKPAICEYCGKEFKRYWQHLRHSHPTEQYPSSKPAICEYCGKGFKRYWQHLRHSHSTEQYPSSKPAICEYCGKGFKRYWQHLRHSHPTGQYTSSKPAICEYCGKGFKCKSVLAYHRNTHTGKRNYTCSVCPKTFFTPQNLDNHLKSHSDSRPYVCDLCSKGFKFSVALLRHRRIHTGEKPYVCDVCGKGFTDSSGRKVHVRTVHLKEPTPYVSKARLEKRRQADTAKSTQEQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01042840;
90% Identity
iTF_01042840;
80% Identity
iTF_01042840;