Nswa033701.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nematopogon swammerdamellus
Gene Symbol
-
Assembly
GCA_946902865.1
Location
CAMPPV010002157.1:2189-9306[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.4 30 6.2 0.8 2 21 62 81 61 86 0.93
2 17 9.3e-05 0.007 17.6 3.3 1 23 180 202 180 202 0.98
3 17 1.7e-06 0.00013 23.1 0.8 1 23 208 230 208 230 0.98
4 17 1.5e-05 0.0011 20.1 0.3 1 23 236 259 236 259 0.94
5 17 1.8e-06 0.00014 23.0 0.7 1 23 265 287 265 287 0.99
6 17 0.00013 0.0097 17.2 2.8 1 23 293 315 293 315 0.99
7 17 0.19 14 7.2 0.1 9 23 321 335 320 335 0.93
8 17 0.00013 0.0097 17.2 2.8 1 23 341 363 341 363 0.99
9 17 0.19 14 7.2 0.1 9 23 369 383 368 383 0.93
10 17 0.0005 0.038 15.3 0.6 1 22 389 410 389 410 0.96
11 17 0.19 14 7.2 0.1 9 23 421 435 420 435 0.93
12 17 0.00013 0.0097 17.2 2.8 1 23 441 463 441 463 0.99
13 17 7.5 5.7e+02 2.2 0.1 9 23 469 483 468 483 0.92
14 17 0.00013 0.0097 17.2 2.8 1 23 489 511 489 511 0.99
15 17 0.19 14 7.2 0.1 9 23 517 531 516 531 0.93
16 17 0.039 2.9 9.4 4.2 1 23 537 560 537 560 0.85
17 17 5.6e-07 4.2e-05 24.6 0.3 1 23 566 588 566 588 0.99

Sequence Information

Coding Sequence
ATGAATAACTACTGTCTGGGTGCCGTCCTGCGTAAGTTCATTGTGCTCTTCAGGTACTTGCGGAGCGTGATGTCGGACGAGCTGGCGCCGCCGCCGCCGCACGTGGAGGCGGGCGCCGGCGGCGGCGCGGTGGAGCCGGGGGCGGCGGAGGAGGCGGAGGGCGGCGGGGGCGACGCGAGCGACATGTGCGCCGTCTGCTCCACACCGCTCCCCAACAGGGATGCTCTCGCGCATCACATGCAGCACTGCCCCATGCATCTCAAAGAGGAAGTTCTTCAACGTATCCTTGAGTCGGAGGTGGGGTCTCCGGACACCCCGCTCACATCCAGCATGATGCTCGAGGGTGCGGGGGAGCCGCACACCGACGACTCCCCGCGTCCCTTCTCCGCCCCGCGTCCCGCCACCTTCGCTCCGCAACCTGCCGTCTCGCGCCCCTGCCCCGTCTCGCGTCCCTTCCCCGCCCCGCGTCCCGTCACCTTCGCGCCGCAAGCCACCGTCGCAGCGCCCAGACAGACTGCAGACAAGAAGGTCAAGGTGTTCGAGTGCCAGGAGTGCAGCAAAATGTTCAAGCACAGGAACAGTCTGCTCTACCACATCATGTCGCACAACGGCAAGCGGCCGCACAAGTGTCTCGATTGTGAGAAGGCCTTTTACACGTCCGGCGCTTTGAAGGTACACATGCGCGTGCACAGCGGGGACAAGCCCTACAAGTGTACCGAGTGCGACCGCGACTTCCGGCAGTGGGGCGACCTCAAGTACCACGTCGTCTCCATACATTCCACCAAGAAAAACTACAAGTGCGACTACTGTGCGAAGGAGTTTGCTCGCAAGTACTCCCTCAACATCCACATAAAGATACACACGGGCGAGCGCAACTACAAGTGCGAGTTCTGCACCAAGACCTTCCGCGCCAGCTCCTACAGGCTCGTGCACATGCGCACGCACACCGGTAACTATACTGAGTTTGCTCGCAAGTACTCCCTCAACATCCACATAAAGATACACACGGGCGAGCGCAACTACAAGTGCGAGTTCTGCACCAAGACCTTCCGCGCCAGCTCCTACAGGCTCGTGCACATGCGCACGCACACCGGTAACTATACTGAGTTTGCTCGCAAGTACTCCCTCAACATCCACATAAAGATACACACGGGCGAGCGCAACTACAAGTGCGAGGTCTGCACCAAGACCTTCCGCGCCAGCTCCTACAGGCTCGTGCACATGCGCATGTGCATGCGCACGCACACCGGTAACTATACTGAGTTTGCTCGCAAGTACTCCCTCAACATCCACATAAAGATACACACGGGCGAGCGCAACTACAAGTGCGAGTTCTGCACCAAGACCTTCCGCGCCAGCTCCTACAGGCTCGTGCACATGCGCACGCACACCGGTAACTATACTGAGTTTGCTCGCAAGTACTCCCAAAACATCCACATAAAGATACACACGGGCGAGCGCAACTACAAGTGCGAGTTCTGCACCAAGACCTTCCGCGCCAGCTCCTACAGGCTCGTGCACATGCGCACGCACACCGGTAACTATACTGAGTTTGCTCGCAAGTACTCCCTCAACATCCACATAAAGATACACACGGGCGAGCGCAACTACAAGTGCGAGTTCTGCACCAAGACCTTCCGCGCCAGCTCCTACAGGCTCGTTGTGCACATGCGCACGCACACCGGCGAGCGGCCCTTCAAGTGTGAGGAGTGCGGCAAGAGGTTCCGGGTGGTGGGCGACCTCAAGCGACACATCATCACCCACACCAAGCTGCGCAAGCACAACAAGAGAGCGCAACCCAAGGAGCCGCTCGTCAAGTTCGTCAACATCAAGATCTGCAAGCAGTCGCCGCCGCGAGTCCTCCACGGCGACGCCGACGAGCCGCCCCCGCCTCCCGGCTATCCTTCCGAGGACGAACTCCTTCAGGAGCAATTCCACGACGATGAATGGCCTAAGCCGAATAGAAACGAGAAGGCGAACATAGAAATGCCGTACCTGACCAAGCACCTCGAGAGGAAGGAGCAGGTGCACAACAACGAGCTGCTGCGACAGAGGCTCGAGCTGAAGATGGGCACCGACCGCGTCGCCTTCTTCAACTTCACCACCTACACGCACCGCTCGGCGGACGCGGCCGCCGAGCTCGCCGCCCCCCGCAACGTCACGCCCTACGAGCACCTGCAGCGCAAGGAGCCGCCGCACAGCCACCTGCACATCAGCAACGTGCGCTCGTACGCGACCAAGCCCGACTCCGCCCCCGCACCCGCGCCCGTCGCCGCCCCCGAGCCCGAGCTCGCGCCCGCACCGCAGACTGACGCCGTCGAGAGCAACGGCTTCCTTGAGAAACTGACAGCGCTCTACTCCATAGCACACATTACTTAA
Protein Sequence
MNNYCLGAVLRKFIVLFRYLRSVMSDELAPPPPHVEAGAGGGAVEPGAAEEAEGGGGDASDMCAVCSTPLPNRDALAHHMQHCPMHLKEEVLQRILESEVGSPDTPLTSSMMLEGAGEPHTDDSPRPFSAPRPATFAPQPAVSRPCPVSRPFPAPRPVTFAPQATVAAPRQTADKKVKVFECQECSKMFKHRNSLLYHIMSHNGKRPHKCLDCEKAFYTSGALKVHMRVHSGDKPYKCTECDRDFRQWGDLKYHVVSIHSTKKNYKCDYCAKEFARKYSLNIHIKIHTGERNYKCEFCTKTFRASSYRLVHMRTHTGNYTEFARKYSLNIHIKIHTGERNYKCEFCTKTFRASSYRLVHMRTHTGNYTEFARKYSLNIHIKIHTGERNYKCEVCTKTFRASSYRLVHMRMCMRTHTGNYTEFARKYSLNIHIKIHTGERNYKCEFCTKTFRASSYRLVHMRTHTGNYTEFARKYSQNIHIKIHTGERNYKCEFCTKTFRASSYRLVHMRTHTGNYTEFARKYSLNIHIKIHTGERNYKCEFCTKTFRASSYRLVVHMRTHTGERPFKCEECGKRFRVVGDLKRHIITHTKLRKHNKRAQPKEPLVKFVNIKICKQSPPRVLHGDADEPPPPPGYPSEDELLQEQFHDDEWPKPNRNEKANIEMPYLTKHLERKEQVHNNELLRQRLELKMGTDRVAFFNFTTYTHRSADAAAELAAPRNVTPYEHLQRKEPPHSHLHISNVRSYATKPDSAPAPAPVAAPEPELAPAPQTDAVESNGFLEKLTALYSIAHIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01042851;
90% Identity
iTF_01042851;
80% Identity
iTF_01042851;