Nswa017375.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nematopogon swammerdamellus
Gene Symbol
-
Assembly
GCA_946902865.1
Location
CAMPPV010000596.1:36946-44795[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.43 33 6.1 0.8 2 21 121 140 120 145 0.93
2 17 0.0001 0.0076 17.5 3.3 1 23 239 261 239 261 0.98
3 17 1.8e-06 0.00014 23.0 0.8 1 23 267 289 267 289 0.98
4 17 1.6e-05 0.0012 20.0 0.3 1 23 295 318 295 318 0.94
5 17 2e-06 0.00015 22.9 0.7 1 23 324 346 324 346 0.99
6 17 0.00014 0.011 17.1 2.8 1 23 352 374 352 374 0.99
7 17 0.21 16 7.1 0.1 9 23 380 394 379 394 0.93
8 17 0.00014 0.011 17.1 2.8 1 23 400 422 400 422 0.99
9 17 0.21 16 7.1 0.1 9 23 428 442 427 442 0.93
10 17 0.00055 0.041 15.2 0.6 1 22 448 469 448 469 0.96
11 17 0.21 16 7.1 0.1 9 23 480 494 479 494 0.93
12 17 0.00014 0.011 17.1 2.8 1 23 500 522 500 522 0.99
13 17 8.1 6.1e+02 2.1 0.1 9 23 528 542 527 542 0.92
14 17 0.00014 0.011 17.1 2.8 1 23 548 570 548 570 0.99
15 17 0.21 16 7.1 0.1 9 23 576 590 575 590 0.93
16 17 0.0081 0.61 11.5 2.0 1 23 596 619 596 619 0.85
17 17 6e-07 4.6e-05 24.5 0.3 1 23 625 647 625 647 0.99

Sequence Information

Coding Sequence
ATGTGCACTTCAATTCAATTTCTTTATTGTGATATCACCCGTCAACTAAAGAATATCGCAGCGCAGGTCGTTAAGCGCCATCTCGCGGCGCTGGAGCGAACCTCGTTGTCTCTGCAATATGAAGCGTCGTACTCTGTTATCGTTGTCGAGTGCTGTAGCTACAAGTCGCTACACTCTGACCACCTTCTACACTTTTACCTTCGTCACCTACAAGGCCCCTCCTCGAGGGTGTACTTGCGGAGCGTGATGTCGGACGAGCTGGCGCCGCCGCCGCCGCACGTGGAGGCGGGCGCCGGCGGCGGCGCGGTGGAGCCGGGGGCGGCGGAGGAGGCGGAGGGCGGCGGGGGCGACGCGAGCGACATGTGCGCCGTCTGCTCCACACCGCTCCCCAACAGGGATGCTCTCGCGCATCACATGCAGCACTGCCCCATGCATCTCAAAGAGGAAGTTCTTCAACGTATCCTTGAGTCGGAGGTGGGGTCTCCGGACACCCCGCTCACATCCAGCATGATGCTCGAGGGTGCGGGGGAGCCGCACACCGACGACTCCCCGCGTCCCTTCTCCGCCCCGCGTCCCGCCACCTTCGCTCCGCAACCTGCCGTCTCGCGCCCCTGCCCCGTCTCGCGTCCCTTCCCCGCCCCGCGTCCCGTCACCTTCGCGCCGCAAGCCACCGTCGCAGCGCCCAGACAGACTGCAGACAAGAAGGTCAAGGTGTTCGAGTGCCAGGAGTGCAGCAAAATGTTCAAGCACAGGAACAGTCTGCTCTACCACATCATGTCGCACAACGGCAAGCGGCCGCACAAGTGTCTCGATTGTGAGAAGGCCTTTTACACGTCCGGCGCTTTGAAGGTACACATGCGCGTGCACAGCGGGGACAAGCCCTACAAGTGTACCGAGTGCGACCGCGACTTCCGGCAGTGGGGCGACCTCAAGTACCACGTCGTCTCCATACATTCCACCAAGAAAAACTACAAGTGCGACTACTGTGCGAAGGAGTTTGCTCGCAAGTACTCCCTCAACATCCACATAAAGATACACACGGGCGAGCGCAACTACAAGTGCGAGTTCTGCACCAAGACCTTCCGCGCCAGCTCCTACAGGCTCGTGCACATGCGCACGCACACCGGTAACTATACTGAGTTTGCTCGCAAGTACTCCCTCAACATCCACATAAAGATACACACGGGCGAGCGCAACTACAAGTGCGAGTTCTGCACCAAGACCTTCCGCGCCAGCTCCTACAGGCTCGTGCACATGCGCACGCACACCGGTAACTATACTGAGTTTGCTCGCAAGTACTCCCTCAACATCCACATAAAGATACACACGGGCGAGCGCAACTACAAGTGCGAGGTCTGCACCAAGACCTTCCGCGCCAGCTCCTACAGGCTCGTGCACATGCGCATGTGCATGCGCACGCACACCGGTAACTATACTGAGTTTGCTCGCAAGTACTCCCTCAACATCCACATAAAGATACACACGGGCGAGCGCAACTACAAGTGCGAGTTCTGCACCAAGACCTTCCGCGCCAGCTCCTACAGGCTCGTGCACATGCGCACGCACACCGGTAACTATACTGAGTTTGCTCGCAAGTACTCCCAAAACATCCACATAAAGATACACACGGGCGAGCGCAACTACAAGTGCGAGTTCTGCACCAAGACCTTCCGCGCCAGCTCCTACAGGCTCGTGCACATGCGCACGCACACCGGTAACTATACTGAGTTTGCTCGCAAGTACTCCCTCAACATCCACATAAAGATACACACGGGCGAGCGCAACTACAAGTGCGAGTTCTGCACCAAGACCTTCCGCGCCAGCTCCTACAGGCTCGTTGTGCACATGCGCACGCACACCGGCGAGCGGCCCTTCAAGTGTGAGGAGTGCGGCAAGAGGTTCCGGGTGGTGGGCGACCTCAAGCGACACATCATCACCCACACCAAGCTGCGCAAGCACAACAAGAGAGCGCAACCCAAGGAGCCGCTCGTCAAGTTCGTCAACATCAAGATCTGCAAGCAGTCGCCGCCGCGAGTCCTCCACGGCGACGCCGACGAGCCGCCCCCGCCTCCCGGCTATCCTTCCGAGGACGAACTCCTTCAGGAGCAATTCCACGACGATGAATGGCCTAAGCCGAATAGAAACGAGAAGGCGAACATAGAAATGCCGTACCTGACCAAGCACCTCGAGAGGAAGGAGCAGGTGCACAACAACGAGCTGCTGCGACAGAGGCTCGAGCTGAAGATGGGCACCGACCGCGTCGCCTTCTTCAACTTCACCACCTACACGCACCGCTCGGCGGACGCGGCCGCCGAGCTCGCCGCCCCCCGCAACGTCACGCCCTACGAGCACCTGCAGCGCAAGGAGCCGCCGCACAGCCACCTGCACATCAGCAACGTGCGCTCGTACGCGACCAAGCCCGACTCCGCCCCCGCACCCGCGCCCGTCGCCGCCCCCGAGCCCGAGCTCGCGCCCGCACCGCAGACTGACGCCGTCGAGAGCAACGGCTTCCTTGAGAAACTGACAGCGCTCTACTCCATAGCACACATTACTTAA
Protein Sequence
MCTSIQFLYCDITRQLKNIAAQVVKRHLAALERTSLSLQYEASYSVIVVECCSYKSLHSDHLLHFYLRHLQGPSSRVYLRSVMSDELAPPPPHVEAGAGGGAVEPGAAEEAEGGGGDASDMCAVCSTPLPNRDALAHHMQHCPMHLKEEVLQRILESEVGSPDTPLTSSMMLEGAGEPHTDDSPRPFSAPRPATFAPQPAVSRPCPVSRPFPAPRPVTFAPQATVAAPRQTADKKVKVFECQECSKMFKHRNSLLYHIMSHNGKRPHKCLDCEKAFYTSGALKVHMRVHSGDKPYKCTECDRDFRQWGDLKYHVVSIHSTKKNYKCDYCAKEFARKYSLNIHIKIHTGERNYKCEFCTKTFRASSYRLVHMRTHTGNYTEFARKYSLNIHIKIHTGERNYKCEFCTKTFRASSYRLVHMRTHTGNYTEFARKYSLNIHIKIHTGERNYKCEVCTKTFRASSYRLVHMRMCMRTHTGNYTEFARKYSLNIHIKIHTGERNYKCEFCTKTFRASSYRLVHMRTHTGNYTEFARKYSQNIHIKIHTGERNYKCEFCTKTFRASSYRLVHMRTHTGNYTEFARKYSLNIHIKIHTGERNYKCEFCTKTFRASSYRLVVHMRTHTGERPFKCEECGKRFRVVGDLKRHIITHTKLRKHNKRAQPKEPLVKFVNIKICKQSPPRVLHGDADEPPPPPGYPSEDELLQEQFHDDEWPKPNRNEKANIEMPYLTKHLERKEQVHNNELLRQRLELKMGTDRVAFFNFTTYTHRSADAAAELAAPRNVTPYEHLQRKEPPHSHLHISNVRSYATKPDSAPAPAPVAAPEPELAPAPQTDAVESNGFLEKLTALYSIAHIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01042852;
90% Identity
iTF_01042852;
80% Identity
iTF_01042852;