Nswa031056.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- ab
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010001561.1:14238-36573[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 1.2 5e+02 1.8 0.0 1 18 26 43 26 51 0.89 2 7 1.7 7e+02 1.3 0.0 4 18 66 80 63 90 0.88 3 7 0.59 2.4e+02 2.8 0.0 1 18 104 121 104 131 0.88 4 7 0.25 1e+02 4.0 0.0 1 19 145 163 145 172 0.86 5 7 1.7 7e+02 1.3 0.0 4 18 185 199 182 209 0.88 6 7 0.59 2.4e+02 2.8 0.0 1 18 223 240 223 250 0.88 7 7 2e-29 8e-27 94.5 0.0 1 100 264 359 264 364 0.95
Sequence Information
- Coding Sequence
- ATGGGCGGCGGAGGTCCCGGCGAGCAGCAGTACTCGCTGCGATGGAACGACTTCCATTCCGCCATGCTGTCCTCCTTCCGCCACCTGCGCGACGAGGAGGACTTAGTGGACGTGTCGCTCGCGTGCGACGGAATAGGTCCCGGGGAGCAGCAGTACTCGctgcaatggaacaacttccattccgccatgctttacctgcgcgacgaggaggacttcgtggacgtgtcgctcgcgtgcgacggAATAGGTCCCGGCGAGCAGCAGTACTCGCTGCGATGGAACGACTTCCATTCCGCCATGCTGTCCTCCTTCCGCCACCTGCGCGACGAGGAGGACTTCGTGGACGTGTCGCTCGCGTGCGACGGAATAGGTCCCGGCGAGCAGCAGTACTCGCTGCGATGGAACGACTTCCATTCCGCCATGCTGTCCTCCTTCCGCCACCTGCGCGACGAGGAGGACTTCGTGGACGTGTCGCTCGTGTGCGACGAAATAGGTCCCGGGGAGCAGCAGTACTCGctgcaatggaacaacttccattccgccatgctttacctgcgcgacgaggaggacttcgtggacgtgtcgctcgcgtgcgacggAATAGGTCCCGGCGAGCAGCAGTACTCGCTGCGATGGAACGACTTCCATTCCGCCATGCTGTCCTCCTTCCGCCACCTGCGCGACGAGGAGGACTTCGTGGACGTGTCGCTCGCGTGCGACGGAATAGGTCCCGGCGAGCAGCAGTACTCGctgcgatggaacgacttccattccgccatgctgtcctccttccgccacctgcgcgacgaggaggacttcgtggacgtgacgctcgcgtgcgacgggctcagcttcagcgcgcacaaggtcgtcctctccgcctgcagcccgtacttcaggaagctgctcaaagcgaatccctgccagcatccaatcgtcatactgcgggatatTCACAATAAGGACATGGACAGTTTACTCAGgttcatgtaccacggcgaggtgcacatagggcaggagcagttgcccgacttcctgaaggccgcacagctgctgcaggtgcgcgggctgacGGACGTGCCCACGCAGGGCGCAGGCGCGACAGCACCGCCGCTCTCCGCCCTAGACAAGATCTCACCAGCGTCGTCGTGGGCGGAGAGCGGCAGCGCCGGCTCGACGGGGGAGCGCGGGCGGGGCGAGGTGCGCGAGAGTCGCGGCGAGGCGCGCGAGGACCGGCGCGCGCGCCGCGCTGACGGCAGCTCCAGCACGCCGCCCAAGCGCGCGCGCTCGTCCGACCTTTACAACGCGCAGATGAAGTCTAGGACGGAGAAGCTGCTCGCGGCGGAGCGGAGCCCCGAGCGGGCCGGCAATAACGGCCACGACATGTCCCTCCTCAACCAGGCGCTCGAGAGTGTGCAGAGCACGCACATGTCCACCATCTCCAACAGTATGGGTGAAGGGGACGAGTCGTCATCGGACGCGGAGCAGAGCGACAACGAGATAGATCTGCCGCGGAACAGCATACCCAAGCAGGAGCCGCTCGACTACGGAGAGGACTCCAACATGATCAATGCTAACGGTGGAATATTGGACCCGTCGAGAACTCCCAACTTTCCCGGGGCGCTGCTAAATCTACAAGTCGATTCCTCCAAGTTCTTCCTCACCGTAGTGGTCTTCCAAATCGGTCCTATACATGGTTCACTGACCGACGAAGTGAGCACTGGCTTCTGCCTCGCCAATGTGGCGAGGCAGAAGTGA
- Protein Sequence
- MGGGGPGEQQYSLRWNDFHSAMLSSFRHLRDEEDLVDVSLACDGIGPGEQQYSLQWNNFHSAMLYLRDEEDFVDVSLACDGIGPGEQQYSLRWNDFHSAMLSSFRHLRDEEDFVDVSLACDGIGPGEQQYSLRWNDFHSAMLSSFRHLRDEEDFVDVSLVCDEIGPGEQQYSLQWNNFHSAMLYLRDEEDFVDVSLACDGIGPGEQQYSLRWNDFHSAMLSSFRHLRDEEDFVDVSLACDGIGPGEQQYSLRWNDFHSAMLSSFRHLRDEEDFVDVTLACDGLSFSAHKVVLSACSPYFRKLLKANPCQHPIVILRDIHNKDMDSLLRFMYHGEVHIGQEQLPDFLKAAQLLQVRGLTDVPTQGAGATAPPLSALDKISPASSWAESGSAGSTGERGRGEVRESRGEAREDRRARRADGSSSTPPKRARSSDLYNAQMKSRTEKLLAAERSPERAGNNGHDMSLLNQALESVQSTHMSTISNSMGEGDESSSDAEQSDNEIDLPRNSIPKQEPLDYGEDSNMINANGGILDPSRTPNFPGALLNLQVDSSKFFLTVVVFQIGPIHGSLTDEVSTGFCLANVARQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -