Nswa023008.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- Trl
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000911.1:287410-295870[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.6e-22 1.1e-19 71.6 0.0 9 101 51 139 48 148 0.90 2 4 2.1e-07 8.5e-05 23.6 0.0 53 100 145 192 135 201 0.88 3 4 3.1e-05 0.013 16.6 0.0 59 100 223 264 213 273 0.89 4 4 5.8e-07 0.00024 22.2 0.0 53 100 271 318 263 326 0.88
Sequence Information
- Coding Sequence
- ATGAGCAGCGTGACGGCTGCAGAAGCGGGCACGGTCGCCGGGGAATGCGAGGCGCAGCAGGAGATCAGCGTGAAGTGGAACGGGTACTCGGGCAACCTGGTGGGCGCGGTGTCGGCGCTCGTGGCGGCGGGTGCGGGCGGCGGCGCGGACGCACTGACCGACGTGACGCTGGTGGCGGGCGGGCGCAGTTTCCCCGCGCACCGGCTTGTCCTGTCGGCGAACAGCGCGCTGTTCCGCACCATCTTCCAGCAGACGCCGGCGCGCGACGCGGTGGTGGTGCTGCACGAAGTGTCGGCGGAGTGCGTGCGCGCGCTGCTCGGCTTCATGTACCGCGGCGAGGTGTGCGTCACCGAGCAGTTCCTGCCGCGCCTGCTGCGCGCCGCCGACGCGCTGCGCGTGTGCGGCCTCTCCGCCGCCGCCGGCCGCGCCGACAACCACAACACCGACACAGTGTCGGCGGAGCGCGTGCGCGCTCTGCTCGGCTTCATGTACCGCGGCGAGGTGTGCGTCACCGAGCAGTTCCTGCCGCGCCTGCTGCGCGCCGCCGACGCGCTGCGCGTGTGCGGCCTCTCCGCCGCCGCCGGCCGCGCCGACAACCACAACACCGACACAGTCAGTGTCGGCGGAGTGCGTGCGCGCGCTGCACGGCGGAGTGCGTGCGCGCGCTGCACGGCGGAGTGCGTGCGCGCGCTGCTCGGCTTCATGTACCGCGGCGAGGTGTGCGTCACCGAGCAGTTCCTGCCGCGCCTGCTGGGCGCCGCCGACACGCTGCGCGTGTGCGGCCTCTCCGCCGCCGCCGGCCGCGCCGACAACCACAACACCGACACAGTGTCGGCGGAGTGCTTGCGCGCGCTGCTCGTCTTCATGTACCGCGGCGAGGTGTGCGTCACCGAGCAGTTCCTGCCGCGCCTGCTGCGCGCCGCCGACGCGCTGCGCGTGTGCGGCCTCTCCGCTGCCGCCGGCCGCGCCGACAACGACAACACCGACACAAAGGTATCATCATCACCTCTGCCGAAGAAGCGCAAGAAGGAAAGTGAAGACGTCAGCAAAACTATTAAGAAACCCAAGGAAACGCAACAAACTAACGAGCAACTTACCTTACGCAATACAGCACGGCGGACACGGCCGGCGTCCCCGCCCCGGGCCAGAGGAGGGCGCGGTGAGGACGCACCGCAGCTTGCGTGGAGTCTGGCGCGCCAGCAGCGCACCGCCGCTCCGCACGATTACGCCGCCATCCTCGCTTACACCGACGACGACGTTGACGTGTCCCTGTGTCTCGCTCACCTGCCACTTCTTAGACGACAGCGCACACCCACCACCAAGGTTCGCCGAACAACATCGCTCCACCGCCACAAGACCTACGACGGGACGACGATGTCCGCCACATCAACCGGCCTGCTTGGGGCTGTCGGGGCTTCGTGCTCTGACTACGGCCCCCGCTACCGGCGTGGCGGTACGAGTCCAAGAGTGCCCAAGGCCGAGCCGATCGAGTCGACCGTGTCGGACTCAGCCGGCGAGAGTACGAGCGACAGCGACGCTCCTCTCTCGCACACCGTCAAGAAGTGCTCTGAGGTGAGCAGCACGCAGCCCGGCCCCGCCCCCGCCCCCGCCCCCGCCGCCGCCCCCACCGCCGGCACCGCCGCCGCCGCCCCTCCCACATCGGATGACTCGAGCGCTTTCATCGAGAAGGAGATCGAGAACGTTCTGCAGAGCGGTGCCATCGTTGAGTCCATCGGCGCCACCACTGAGCACACCCACACCCCAGCCGTCGCCGCCGCCGCCGCTCATCTTCAAAACGATAAAGGAGGTGCAACGTACGCGAGCCCGTCCTTCCCGTGTCCGTTCTGTCCGCGCGTGTACAACAGCTGGGGCTACCGGCGACGCCACGTTAAGTCGCGCCACCATACCAACCGGTTGTCGTGCAAGTGGTGCGTGTGCGAGCTGGAGTCGACGGGCGCGTGGTACGGGCACGCGGTGCGGGCGCACGGCGCGGCGCACGCGGCCGCGCGCGACTCGCTCGTGGTGCTGGTGGAGGCGCATGCGGTGCTCACGCTGCACGAGCCCAGCCCGGCCGCGCTGCTGCGCCAGCTCGACCCGCTGCACTCGGACCATCCGTCTCACCCGTCTCCCCCGTCTCACCCCGGCGACTAA
- Protein Sequence
- MSSVTAAEAGTVAGECEAQQEISVKWNGYSGNLVGAVSALVAAGAGGGADALTDVTLVAGGRSFPAHRLVLSANSALFRTIFQQTPARDAVVVLHEVSAECVRALLGFMYRGEVCVTEQFLPRLLRAADALRVCGLSAAAGRADNHNTDTVSAERVRALLGFMYRGEVCVTEQFLPRLLRAADALRVCGLSAAAGRADNHNTDTVSVGGVRARAARRSACARCTAECVRALLGFMYRGEVCVTEQFLPRLLGAADTLRVCGLSAAAGRADNHNTDTVSAECLRALLVFMYRGEVCVTEQFLPRLLRAADALRVCGLSAAAGRADNDNTDTKVSSSPLPKKRKKESEDVSKTIKKPKETQQTNEQLTLRNTARRTRPASPPRARGGRGEDAPQLAWSLARQQRTAAPHDYAAILAYTDDDVDVSLCLAHLPLLRRQRTPTTKVRRTTSLHRHKTYDGTTMSATSTGLLGAVGASCSDYGPRYRRGGTSPRVPKAEPIESTVSDSAGESTSDSDAPLSHTVKKCSEVSSTQPGPAPAPAPAAAPTAGTAAAAPPTSDDSSAFIEKEIENVLQSGAIVESIGATTEHTHTPAVAAAAAHLQNDKGGATYASPSFPCPFCPRVYNSWGYRRRHVKSRHHTNRLSCKWCVCELESTGAWYGHAVRAHGAAHAAARDSLVVLVEAHAVLTLHEPSPAALLRQLDPLHSDHPSHPSPPSHPGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -