Nswa024106.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- Hr39
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000972.1:72953-104407[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.1 3.5e+03 -2.0 1.1 117 166 170 221 103 254 0.54 2 5 0.13 4.4e+03 -2.4 1.6 124 162 406 444 363 468 0.57 3 5 3.7e-08 0.0013 19.2 0.1 1 20 579 598 579 606 0.91 4 5 0.0036 1.2e+02 2.8 0.0 75 118 622 663 602 674 0.66 5 5 3.2e-67 1.1e-62 213.7 0.0 202 408 703 910 684 910 0.93
Sequence Information
- Coding Sequence
- ATGTCGAGCCCGGGCGAAGTGGACGGCGTGAAGCTGGAGGGAGGTGTGAGCCACCGGGGCAACGTGTCGGTGACTACGATCGGCGTTGGGCACGGTCAGACCAACAATGGTCAGTTCTCGTACAGCTCTAACGGAGTCAGGATCAGCGTGGGCTCGGAGGAGCGCAGACACGCCAGCCTGCCTCCGGACGAGGACTCCAACGACGCAGAGATATCCAGTATCGGCTTCCTGCAGATGCAGTATGAGGTGAACATGCGCAACAAGAAGAGGGGCGCGTCGAGCGGCGGCGCGGCGGCGGCGGGGTGTGCGGAGGGGCAGCGCGCGGCGCCGCCGCCTCCGGAGCGCGAGCGGCCCATGTCCTGGGAGGGCGAGCTCTCCGACTCTGAGATGATCATCGACACAAACCTCCACGACGAGAACAGCAGCTCGCTGGACCTGCAGTCGTCGCGTGACTCGATCGACACGCTGCGCGCGGTGAGCGTGCGGCCGGACGCCGCGCAGCACCGCGAGCACGCGCCACCGCTCAAGTTCCCGCAGCACCAGCACCAGAGGAGTCTCAGCATGAATAGGATATCTGTGCTGACTGAGAGCGGCGCTTCGTCCTCCCGCAGACCGCCCTCCCCCACCAGCAGCATCAACTCGTCTTCCTCCACGCAGAGCGGGCCGGAGCACCCGCGGCTCGCGCCCGCCGGCGGCCTGCCCCCCGGCCCCGCGGCCCCCGCACAGGACGCACACAACCTCGTGAAGAAGGAACATTTGCAGACTCAGCTGCCGGAGGTGAAGGGGGAAGGCAACATCCTGGTGGACAAGCTGCTGGGCTCGCTGCGCAGCTCGCCGCTGCTGGGCCGGCTGCCGCGCGTGCACTCCAACGCCAGCACAGACTCCGCCGTGAAGGGTGAAGGCAACATCCTGGTGGACAAGCTGCTGGGCTCGCTGCGCAGCTCGCCGCTGCTGGGCCGGCTGCCGCGCGTGCACTCCAACGCCAGCACAGACTCCGCCGTGAAGGGTGAAGGCAACATCCTGGTGGACAAGCTGCTGGGCTCGCTGCGCAGCTCGCCGCTGCTGGGCCGGCTGCCGCGCGTGCACTCCAACGCCAGCACAGATTCCGCCGTGAAGGGTGAAGGCAACACCCTGGTGGACAAGCTGCTGGGCTCGCTGCGCAGCTCGCCGCTGCTGGGCCGGCTGCCGCGCGTGCACTCCAACGCCAGCACAGACTCCGCCGTGCACTCCATGTACACTCACAGCGTCTACAGCAGCCCGTCGGCGAGCCCGCGCGCGTCGCGCCACTACACGCCGTCGCTGTCGCGTAACAACAGCGACGCGTCGCACTCGTCCTGCTACTCCTACAGCTCAGAGTTCTCGCCCGCGCACTCGCCCGTTCAGAGTCGGCACGCGCACGGCGCGCCGGGCGCGGGGCTGGTGTACCGGGAGGTGTTCCCGCCGTCGCCGGCGCACGACGAGGACGCCGACCCCTCCGACGAGCGCTACCACCACCACATCAGCCGGCAGCAGCTCATCAATAGTCCGTGCCCGATCTGCGGCGACAAGATCAGCGGCTTCCACTACGGCATCTTCTCGTGCGAGTCCTGCAAGGGCTTCTTCAAGCGCACCGTGCAGAACCGCAAGAACTACATGTGCCTCCGCGGCGGCCACTGTCCCGTCACCGTCGCCACCAGGAAGAAGTGCCCCGCGTGCCGCTTCGACAAGTGCCTCAAGTGCGGCATGAAGCTGGAAGCGATACGAGAGGACCGAACGCGCGGCGGCCGCTCCACGTACCAGTGCTCGTACTCGCTGTCGGGCGCCGCCTCCACCGGCTCGCTGCTGTCCGCGCACGTGCCCACCACGCTGCGGCACGCCTCCAGTCTCACCTCCGTGAACGGGCCGGCGTCGTACAACAGCAGAGGAGAGCCGAGCAGCAGTAGACTGACGCCAGATGTGCCTCCGTTACTGCAGGAGATAATGGACGTGGAGCACCTGTGGCAGTACAACGAGTCGGAGCTGCGCGGTCTGTCGAAGCCGGTCGGTGCGGGGGCGGCGGGCGCGTCGGGCGCTAGCGGCAGCAGCAGCGCCGGCAACAACCTGCTGCTCGCGGCGACCGGCATCAACGCTCACAACTCCAGCCCGGACTTCCTGGCGAACCTGTGCAACATAGCCGACCACCGCCTATACAAGATTGTCAAGTGGTGCAAGAGTCTGCCGCTCTTTAAGAATATTGCTATCGACGACCAGATCTGCCTGCTGATCAACAGCTGGTGCGAGCTGCTGGTGCTGTCGTGCTGCTACCGCGGCGTGGGCACGCCCGGCGAGGTGCGCGTCGGCGCCGGCCGCGGCGTCACACTCCAGCAGAGCACCAAATTGGGTCTGACGCCGTGCATCGAGCGCATGCTGGCGTTCACGGACCACCTGCGCCGGTTGCGGGTCGACCGCTACGAGTACGTCGCTCTCAAGGTCATCGTTCTCCTCACGTCCGACGCATCGGACCTGCGCGAGGCGGAGAAGGTGCGCGCGTCGCAGGAGAAGGCTCTGGCGGCGCTGCAGGCGTACACCGCCGCTCACTACCCCGACACGCCGAGCAAGTTCGGCGAGCTGCTGCTGCGCATACCCGAGCTGCAGAGGACTTGCCAGTACTTCATGCAGGTCGGCAAGGAGATGCTGAACCCTTCCAACAAGAGTAAAGATGGCGACGCGCCCAGCTTCAATCTGCTGATGGAACTGCTCCGAGGCGACCACTGA
- Protein Sequence
- MSSPGEVDGVKLEGGVSHRGNVSVTTIGVGHGQTNNGQFSYSSNGVRISVGSEERRHASLPPDEDSNDAEISSIGFLQMQYEVNMRNKKRGASSGGAAAAGCAEGQRAAPPPPERERPMSWEGELSDSEMIIDTNLHDENSSSLDLQSSRDSIDTLRAVSVRPDAAQHREHAPPLKFPQHQHQRSLSMNRISVLTESGASSSRRPPSPTSSINSSSSTQSGPEHPRLAPAGGLPPGPAAPAQDAHNLVKKEHLQTQLPEVKGEGNILVDKLLGSLRSSPLLGRLPRVHSNASTDSAVKGEGNILVDKLLGSLRSSPLLGRLPRVHSNASTDSAVKGEGNILVDKLLGSLRSSPLLGRLPRVHSNASTDSAVKGEGNTLVDKLLGSLRSSPLLGRLPRVHSNASTDSAVHSMYTHSVYSSPSASPRASRHYTPSLSRNNSDASHSSCYSYSSEFSPAHSPVQSRHAHGAPGAGLVYREVFPPSPAHDEDADPSDERYHHHISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGHCPVTVATRKKCPACRFDKCLKCGMKLEAIREDRTRGGRSTYQCSYSLSGAASTGSLLSAHVPTTLRHASSLTSVNGPASYNSRGEPSSSRLTPDVPPLLQEIMDVEHLWQYNESELRGLSKPVGAGAAGASGASGSSSAGNNLLLAATGINAHNSSPDFLANLCNIADHRLYKIVKWCKSLPLFKNIAIDDQICLLINSWCELLVLSCCYRGVGTPGEVRVGAGRGVTLQQSTKLGLTPCIERMLAFTDHLRRLRVDRYEYVALKVIVLLTSDASDLREAEKVRASQEKALAALQAYTAAHYPDTPSKFGELLLRIPELQRTCQYFMQVGKEMLNPSNKSKDGDAPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01042754;
- 90% Identity
- iTF_01042754;
- 80% Identity
- iTF_01042754;