Nswa025493.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010001080.1:96516-109885[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.36 1.2e+04 -3.9 0.1 53 75 84 106 71 114 0.65 2 3 4e-80 1.4e-75 255.3 25.0 1 298 123 417 123 419 0.89 3 3 0.3 1e+04 -3.6 8.4 129 174 426 468 418 488 0.57
Sequence Information
- Coding Sequence
- ATGGGGTTGCTTTCTAAAGTTAGCGCACAGGGAACTCCTGGGAATAGTGAAGACGAGAACGATGCGGGTGCCTTCACCGATGGCGACTTTGACGACTCGGACGAAGATAAGAATGGAGTGAATCGAAGCGCCGAAATGGCAGCGGCACTGATTCCTGTGAACGAGACCATCAATGCGAACATTAGCCATGCGGAGCTCGAGAGTAATGGCGTGCATCACGCCGAAAGCTACTACGGTACCAGCAACGACATGGCGCACACGAATGGGACGCGCCCCGATGCAAAGGTCGAACTGTCAAGGAGGGACTCAAACTCCGCAGATCAGAACACTACCATCGTTGACTTTATTGGAAAGGAACATTCACATGCGGAGCAGCGGCTGGCGGCGCGGCGCGCGGCGCGGGCGGAGGCGCGCGAGATTCGCATGCGCGAGCTCGAGCGGCAGCAGCGCGAACACGAGGACCATGCGGACAAAGCCTACGACATGTATAGCGAGACGGTGGGCGGTACGGGCCGGCGCGCAGGCGCGGCGGCGAGCGTGGCGGCGCGCGCGCCGCTGCACTCTCCACGCCGCTCCTCCGACACCTCCGACACGCTCGACGACACCTTCAGCCTCAAGGACCTTAGGCACGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAACTGGACAATGACAAGGCCTCGCTCTCCTACCAGCTCGAGCTGCTCAAGGACCGAATAGAGGACCTGCAGGAGCAACACGCTCAGCTACAGAGGGAGCACAAAGAGAAATGTTCGGCGCACGAGCGTCTGCGGCGCGAGCACGCCGCCCTGCAGGAGGAGTTGTTGCAGGCGCGCAACGCGATCCGCGCGCGCGACGCCGCCATCGCCGCCGCCGGCCTCGCGCTCGTCGAGGCGACGCTCGAGTGCGCGCCGGAGCTGGCGGCAGCGGCGGCCGCGGCGCCCGGCCTCGGCGACGTACCGCCGCTGGCGCTCGTGTCTCTGCAGTCACACGATATGCTGCAGCAGACAGAGGGCACTCTCGACGTGCGATTGCAGAAGCTGTTCAGCTCGAAGCAGCAGCTGGAGTCGGAGGTGCGGCGGCTGAAGCTGCAGCTAAACGAGGAGCAGGACCGGGCGGGCCGGCACAACGGCACCGCACACTACGACCAGTACGACGAGGAGATGGAGAGCGTGCGGCGGAACTGCGCGGAGTACAAGTCGCGCGCGGCGCGCGCGGAGACGGAGGCGGCGGTGCTGGGCGCGAGCGCGGCGCGGCTCGAGGCGCAGGTGGCGAGGCTGCGCGCGCGGCAGGACGACCGCGACGCCGAGGAGGAGCAGCTCAAGCAGGACAGGCGGCGGCTCCAGCGCGAGGCGCGCGAGGCTCTGAACCGCGTGGAGGAGCTGGAGACCGAGAACAGCCACTTGACCAAGAGGCTGGACAAGCTGAAGAACGCCAAGTCGGCGCTGCTCAAGGAACTCTGA
- Protein Sequence
- MGLLSKVSAQGTPGNSEDENDAGAFTDGDFDDSDEDKNGVNRSAEMAAALIPVNETINANISHAELESNGVHHAESYYGTSNDMAHTNGTRPDAKVELSRRDSNSADQNTTIVDFIGKEHSHAEQRLAARRAARAEAREIRMRELERQQREHEDHADKAYDMYSETVGGTGRRAGAAASVAARAPLHSPRRSSDTSDTLDDTFSLKDLRHELKEVEEKFRKAMILNAQLDNDKASLSYQLELLKDRIEDLQEQHAQLQREHKEKCSAHERLRREHAALQEELLQARNAIRARDAAIAAAGLALVEATLECAPELAAAAAAAPGLGDVPPLALVSLQSHDMLQQTEGTLDVRLQKLFSSKQQLESEVRRLKLQLNEEQDRAGRHNGTAHYDQYDEEMESVRRNCAEYKSRAARAETEAAVLGASAARLEAQVARLRARQDDRDAEEEQLKQDRRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -