Nswa021401.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nematopogon swammerdamellus
Gene Symbol
Arid2
Assembly
GCA_946902865.1
Location
CAMPPV010000810.1:197658-252279[+]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.8e-06 0.02 16.4 0.0 2 52 633 688 632 689 0.81
2 3 0.00025 2.9 9.5 0.0 24 52 691 720 688 722 0.91
3 3 1e-06 0.012 17.1 0.0 24 77 723 779 720 781 0.77

Sequence Information

Coding Sequence
ATGTCGAAGGCTCCGATCAACACCAAGTCGAGCACGTACGCTCGTGACCGCGAGCTCTTCCTCAAGGAGCTGCGGCAGTTCAACGAGAGCAAGGGGATCTCTAACCGGCCGCCGACAGTGAACGGCAAGGAGCTGGATCTGTACCTGTTCTACCTGCTGGTGACTCAGCGCGGCGGCGTCGGCAAGGTGAACCAGCAGGGCGGGTGGGACACATTCCTGCGGCCGCTGCACCTGCCCACACCCTGCGTCAACGGCTCCGCACTCCTCCGCAGGATATATGGAGCATCTCTCGAGCGGTACGAGCGCGCGCGCGGGCCGCCGGGCCGCGACGACGACAACGACCCGGAGGAGGACTACCGGCGCGGGCGGGGCAGCGCCGCCCCGCGCTACGTGCACACGCTACAAGCCGCGCTCCTCACCGACCGTCTGGTGGTTGTTTCACTGATGCGTGTGAGGATGTCAGACTGGACGCGGTGGTCGACGCGGGTGGCGGGGCCGTCGGAACGCCTGGCGCTGTCGCTGCTGTCGCCGATGCCCAACGAGCAGGACTTCGCGGTGAACGTGTGCACGGTGCTCGCGGCGGACATCTCCAACCGGCTGCCGCTCGCCACCACGCCGCACATACTCGACTTCCTGCTCGCGCACGCCGGCGTCTACAACCATCCGAGCCTGCGCGACACAATCGGGCGGTCGTACCGCGAGGCGCGCGGGATGGCGCCGGACGAGTTCTGGTGCGCGCGCGCCGGCGGGGGCGGCGCGCGCGAGCTCGCCGACGAGACCAAGTTCATGAGCTTCTGCGCGAGCGAGCGCGCGGACCTCATGGTGCAGGCGCTCGCCGCTCAGAACGCGCTCAGCGACCGACTCCTGCAGGAGCCGGCCGAGAAGGACGCTCTGCCCGTCGAGCCGGCCGACGAGGTACCACCACCGGTGGTGGAGGAGCGCGAGCGAGGTGTGGAGCGGGCGTGGGAGCGCTCGGAGGACTGGATGTCGGAGGCGTGCGGCGAGGAGGAGGAGCTGTTCGCGCCGCGGCTCAGCGGCGGCGCGCGCTGCGTCTACACCCAGCGCATCATCCAGGTCGCCTCCATCATACGCTCCCTCTCCTTCCACGAGGACACACTCGCGCTACTCTCCAAGCACAACACTCTCCTCAGGTTCCTGCTGCTGTGCGCCAACTGTTGGGTGGGTACGCTGCGGCAGACAGGGCTCGACACGCTCGGCAACATCGCACAGGAGCTCGTCATCAAGGAGCCGGCGACGTGCCTGCTGTCGCGGCACGTGCTGTCGACGGTGCAGGCGGCGCTGGTGTCGCCGGACCGCGCGCGCGTGCTCGCCGCCCTAGAGCTGCTCAACAAGCTGGCGCAGAACGAGGCCAACGAGGATGTGCTGCTCCGCTGCCTTGAGCCAGAGGTGTACGAGGGGGTGTGCGCGCTGCTGACGCTGCGCGACATCATGCTGCTGGTGTGCACGCTCGAGTGCGTGTACGCGCTGACGTCGCTCGGGGAGCGCGCGTGCGAGCGAGCCGTGCGCGTCACCGGCCTCGTCCACACCCTCGTTTCTCTACTCACCGTCGAGGCGCAGAGCTACGGGCCTAAGGCATGCATCCTGATGCGCGTGGTGGAGACGGTCAGCGGGCCAGTGGAGGCCGCCGCCCCCGCAGCCGCTCCCGCCCCCGTGCCCGCCCCCCATCACACGCAGCCCAGCACGCCGCTCAAGTCCCGGCAGGCGGCAGCGGCGGCGGCGGCGGCGGCAACGACGGAACCGGAGCCGCAGCGCTCGGCCCCCGCGGCCCCCGCCACCTCCGCGCCCGCCGCCGCGCCGGCACCCACCCCCGCCCCCGCCCCCGCCAACACCGTGCAGGCCTTGCACGCGCAGCAGCAGCAAGTGCAGGAGAACGAGCAGTTTGCGATGGCGTGGCTGCGGGCGGCGTGGGAGCCGTGCGCGGTGCTGGTCACCAACTCGGGCAGCGACGCCGCCGAGGTCTACCGCCAGTACGTCGCCTGCTGCCAGAAGGTCGGCCGCAAGGGACTCATCGCGCCCTCGCACTTCCCGCGCCTCGTCCGCGACGCCGCCGAGGTCTACCGCCAGTACGTCGCCTGCTGCCAGAAGGTCGGCCGCAAGGGACTCATCGCGCCCTCGCACTTCCCGCGCCTCGTCCGCGACGCCGCCGAGGTCTACCGCCAGTACGTCGCCTGCTGCCAGAAGGTCGGCCGCAAGGGACTCATCGCGCCCTCGCACTTCCCGCGCCTCGTCCGGACTGTGTTCGGAGGCACGGTGGGGCCCAACAACGTGACGCTCGCGTCCGGTGAGACGCAGACAGTGTACGTGGGCGTGCGCGCGCGCAACCTCGCCAACCGCACAGCCGCACAAGTCGGCGGGCCGGCGTCACCCATACTGAAGGCGCAGCTCACCAACATGAAGGCGGAGTCACAGGGCAAGCCCTCCGTCGCCCAGCCGCCGGCGTCCGCGGCTGGAGCGGCGCCGCACCCGCACTTGTCTCAGGCGCTCGAGTCGAGCGCGCCGTCCGCCCCGGCGCCCTCGGCCTCCGCCCCCGCCGCCGCCTCCGCCCCGGGGGCCGGCGCCGCCTCCAACACGAGCCTCATCAAGCACCTGCTCGCGCACAAGGTTAGCGTCCCGCCAGCCACAGCGCAAGTGGCGCAGCGGCAGAACCAGCAGCGCATGCTGGGTCAGCCTCCGCCTGCCGCCGCGCCTGCCGCCGCGCCCGCCGCGCAGCCCCCGCCCGCCGCCGCCGGCAGCGGGGGCCTGGGTGTGGACCCGGAGGAGCTAATCAAGTGCAGCACCATCACCTCCACTGGAGTTTCCAGCACTCTGCCCACCCACGACCAGATAGTGAAAACGACCGCGCAGCACGTTGACGACAATCAAGGGATCAAACAGGAGCAAGCGGCAGACACACAAATAGAGGAGAACTCACAGACGACGAGCTCCGGCACCGTGGTACCCGTCATGCATGCATATAATACTTGTGTTGAGAAACCGGCACAAAACAAAATGCTTGCTGATTTGCTGGAGAAGAAGTCGACGCCGCCTGTGCAGGTGGTGCAGATGGCGCCACAGCTGAACGCGCCCACCATACAGATCACGGAGACCGGCCAGATCGTGCAGGTCAAGCACGAGAGCAACCCCGTCGTGCAAGTGAAGGACGCCTCGCAAGTTCTGCCACACTTCGTCCAGATCAAGAACGACCAGGGACAAATTATTCATCTCAAGAACGATCAAGGCCAGATCATTCACATCAAGAATGAACAGGGGCAGATCTTTCAAATAAAGAACGAAGGACAAATGTTGAACCAGTCGGGACAGATCATTCAAATAAAGAATGATCAGGGACAGATTGTGCACGCCGGCCAGATCGTTCAGCATCAGGGTCAGATGATCCAGCAGAGCCAGAACGTTCAACAGGGCCAGATGAGCCAACAGGGCCAGATGAGCCAACAGGGTCAGATGATTCAACAGGGCCAGATGAGCCAACAGGGCCAGATGATCCAACAGGGTCAGATGAGCCAACAGGGCCAGATGATCCAACAGGGTCAGATGAGCCAACAGGGCCAGATGATTCAACAGGGCCAGATGATCCAACAGGGTCAGATGAGCCAACAGGGCCAGATGAGCCAACAGGGCCAGATGATCCAACAGGGTCAGATGAGCCAACAGGGCCAGATGAGCCAACAGGGCCAGATGATCCAACAGGGTCAGATGAGCCAACAGAGCCAAATGATCCAACAGGGTCAGATGGCTCAACAGGGCCAGATGGTTCAACAGGGCCAGATGGTTCAACAGGGCCAGATGATTCAGCAAGGCAGCCAGATTGTTCAAGGAGGTCACATAGTTCATCAGGGTGGACAAATTGTTCAAGTTCAACATGGCGGCCAAATTGTTCAAGGTCAAATTGTCCAACAGGGAGGTCAGATCATTCAAGGTCAAATGGTTCAACAGGGCGGACAGATAGTTCAAGGTCAAATGGTTCAACAGAGCGGGCAGATCGTTCAGGGAGGTCAAGTCATCCAACAGACGGGCCAAATTATACAACAAGGTGGACACATCGTCCAAGGGCAAATAATTCAACAGGGCAGCCAATTAGTTCAGTCCGGCGGACATCTAGTTCAGGGAGGTCAGATCGTGCAGCACTCGGGTCAAATAATTCATCAAGGAGGCCAAATAGTCCAAGGAGGCCAGATAGTTCAAGGGGGTCAAATAGTTCAAGGGGGCCAGATAGTTCAAGGGGGACAGATGTTCCAGCATGGCCAGCTGATGACGTCCAAGACGGAGGCTGCAGTCATCGAGACCATCGACCTGGACCCTGACGTTCAGGAGCCGCCTGCTAAGAAATCGAAGACCGAGAAACAAGAGACGGGCGGCGTGGCTCCGGAGGGCGTGTCCAAGACTGCGGCGAACCTGTACGCGGCGCTCGCGGCCTCCGCGCTCGAGGACGAGGAGGACCTGGTCAGTCGCCACTCTCACACGCTCTACACTAACCTACCCTTCCTCTTTATACTCCACTCGAATTGCTCAATAAAAGGGGGCGCGGGAGATATTCCGACGGTGCAGGTGCAGGCGCCGACGCTGCAGGTGCAGCAGCCGCCGCCGGCGCAGGCCGCGCCCGCACCCGCGCAGCACCAGCAGCAGAGCGTGCAGGTGCAGCAGCCGGTGCTGCAGGTGCAGCCGATGGAGGTGCCGGCCGTGCTGGGCTCCCCGCCCCCGCACCTCATACTCCAGGAGAAGCCGCTGGTGTCGCAGCCGGCACAGTTTGTGCAACAACCGATGCAGATCATCGCGACACCCAGCAACGCGCAAGGTGGTCTGAGCTACATAGCGCAGAACCTGCCCGGCAACATGCTGCCCTCGCACAAGACCATCATCATCGTGCAGGGCGGCGGCGGCGGCGGGCCCATCACGCTCACGGTGAACAACCCGGGCGGGCTGGACGAGGCCGCGCTCAACAGCCTCATCTCGCAGGCCAGCGAAGCCATCACCCAGCAGCAGATTATTCAGAACGCGCCACAGTTGACGGGAAGCCAGCAACCGATAATAACGAGCCAACAGCAAGCGCACCGAGCGCCCACTCAAACCAACCTCGTCAACCAACAGGGACAGCAGCTGCTGGTGCACAAGCAAGCCCAGCCGACCGCCATCATCAGCAGCCAGCCCAGCCAGCTCGGCCAGCTGGGACAGATGGTGGTGTCGGCCAACCAGCAGATAATCAGTCAGGGCAGTCAAATAGTGGCGGTGTCGGGCGGGCAGCAGATGCTCGTGAGCGCGGCGCAGGTGATGAGCGGCGCGGGCGGGGGCGGCGGGGTGATGACGGTGGCGGGGAGCGGCGGGCAGCAGTTCGTGGCGGTGTCGGGGCAGCAGCAGCTGCTGGTGAACAAGGCGGGCGTGCACCGCGTCGTGCAGCAGCCGCAGCGCGGTCAGCACCACCAGCACCAGCAGGACGCCAAGCCCACAGTCATACAGAGCGCACACCCGCAGAAGACGGTGGCGAAGGGCGGGGCGGTGCGACAGGTGATCCGGCAGCCGGTGATGGTGGGCGGCAACAAGATCGGCGAGGAGCACATAGTCATCCGCCACTCGGCCGCCGCCTCCGCCTCCTCCGACCCGCCGCCCCTCTTGCACAAGGACACAAAGCCAGCTCCGACGAAACCTGCAACGACGTCCTCCGGCACCACACATCCTGTATCGGCCACCTCGACTTCCACCGCAGCTGCCGCCGCTGCCGGCAAGACTGACGACATCCCGTGGATTTGCCACTGGAAGGGATGCGGAAAAATGTTCGAGAGTGCGGGGGGAGTGTTCGGGCACGCGGCGCGCGCGCACTGCCCGCCGGGCGCGAGCGGCGAGGCGCCCTGCATGTGGCTCGACTGCGACCGCGTGCCGCGACGCACCTTCGCACTCCTCAACCACCTGCACGACCGGCACTGCACCGCCGACGCGCTGCGGGCGGTGTTCGCGTCGCGGCGGCACGCGGCCGCCGAGGCGGAGGGCGGCAAGTCGGTGTCGCTGGGCTACCCGCCCAACGCCGCGCTGGCCGCCCTCAACAAGCACGCTGTCGACTTCCTCAACCCGCGCGAGCTCATGGTCAGTCAAACTCTCTCAACCGACACTTAA
Protein Sequence
MSKAPINTKSSTYARDRELFLKELRQFNESKGISNRPPTVNGKELDLYLFYLLVTQRGGVGKVNQQGGWDTFLRPLHLPTPCVNGSALLRRIYGASLERYERARGPPGRDDDNDPEEDYRRGRGSAAPRYVHTLQAALLTDRLVVVSLMRVRMSDWTRWSTRVAGPSERLALSLLSPMPNEQDFAVNVCTVLAADISNRLPLATTPHILDFLLAHAGVYNHPSLRDTIGRSYREARGMAPDEFWCARAGGGGARELADETKFMSFCASERADLMVQALAAQNALSDRLLQEPAEKDALPVEPADEVPPPVVEERERGVERAWERSEDWMSEACGEEEELFAPRLSGGARCVYTQRIIQVASIIRSLSFHEDTLALLSKHNTLLRFLLLCANCWVGTLRQTGLDTLGNIAQELVIKEPATCLLSRHVLSTVQAALVSPDRARVLAALELLNKLAQNEANEDVLLRCLEPEVYEGVCALLTLRDIMLLVCTLECVYALTSLGERACERAVRVTGLVHTLVSLLTVEAQSYGPKACILMRVVETVSGPVEAAAPAAAPAPVPAPHHTQPSTPLKSRQAAAAAAAAATTEPEPQRSAPAAPATSAPAAAPAPTPAPAPANTVQALHAQQQQVQENEQFAMAWLRAAWEPCAVLVTNSGSDAAEVYRQYVACCQKVGRKGLIAPSHFPRLVRDAAEVYRQYVACCQKVGRKGLIAPSHFPRLVRDAAEVYRQYVACCQKVGRKGLIAPSHFPRLVRTVFGGTVGPNNVTLASGETQTVYVGVRARNLANRTAAQVGGPASPILKAQLTNMKAESQGKPSVAQPPASAAGAAPHPHLSQALESSAPSAPAPSASAPAAASAPGAGAASNTSLIKHLLAHKVSVPPATAQVAQRQNQQRMLGQPPPAAAPAAAPAAQPPPAAAGSGGLGVDPEELIKCSTITSTGVSSTLPTHDQIVKTTAQHVDDNQGIKQEQAADTQIEENSQTTSSGTVVPVMHAYNTCVEKPAQNKMLADLLEKKSTPPVQVVQMAPQLNAPTIQITETGQIVQVKHESNPVVQVKDASQVLPHFVQIKNDQGQIIHLKNDQGQIIHIKNEQGQIFQIKNEGQMLNQSGQIIQIKNDQGQIVHAGQIVQHQGQMIQQSQNVQQGQMSQQGQMSQQGQMIQQGQMSQQGQMIQQGQMSQQGQMIQQGQMSQQGQMIQQGQMIQQGQMSQQGQMSQQGQMIQQGQMSQQGQMSQQGQMIQQGQMSQQSQMIQQGQMAQQGQMVQQGQMVQQGQMIQQGSQIVQGGHIVHQGGQIVQVQHGGQIVQGQIVQQGGQIIQGQMVQQGGQIVQGQMVQQSGQIVQGGQVIQQTGQIIQQGGHIVQGQIIQQGSQLVQSGGHLVQGGQIVQHSGQIIHQGGQIVQGGQIVQGGQIVQGGQIVQGGQMFQHGQLMTSKTEAAVIETIDLDPDVQEPPAKKSKTEKQETGGVAPEGVSKTAANLYAALAASALEDEEDLVSRHSHTLYTNLPFLFILHSNCSIKGGAGDIPTVQVQAPTLQVQQPPPAQAAPAPAQHQQQSVQVQQPVLQVQPMEVPAVLGSPPPHLILQEKPLVSQPAQFVQQPMQIIATPSNAQGGLSYIAQNLPGNMLPSHKTIIIVQGGGGGGPITLTVNNPGGLDEAALNSLISQASEAITQQQIIQNAPQLTGSQQPIITSQQQAHRAPTQTNLVNQQGQQLLVHKQAQPTAIISSQPSQLGQLGQMVVSANQQIISQGSQIVAVSGGQQMLVSAAQVMSGAGGGGGVMTVAGSGGQQFVAVSGQQQLLVNKAGVHRVVQQPQRGQHHQHQQDAKPTVIQSAHPQKTVAKGGAVRQVIRQPVMVGGNKIGEEHIVIRHSAAASASSDPPPLLHKDTKPAPTKPATTSSGTTHPVSATSTSTAAAAAAGKTDDIPWICHWKGCGKMFESAGGVFGHAARAHCPPGASGEAPCMWLDCDRVPRRTFALLNHLHDRHCTADALRAVFASRRHAAAEAEGGKSVSLGYPPNAALAALNKHAVDFLNPRELMVSQTLSTDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01042501;
90% Identity
iTF_01042501;
80% Identity
iTF_01042501;