Nkoe023529.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- -
- Assembly
- GCA_963924495.1
- Location
- OZ004658.1:2738665-2743128[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 1.2 1.6e+04 -3.4 0.0 18 29 35 46 33 48 0.80 2 8 0.00038 5.1 7.9 0.0 23 45 163 185 154 188 0.91 3 8 9.1e-05 1.2 9.8 0.1 21 44 189 212 185 216 0.90 4 8 5.1e-05 0.68 10.7 0.5 21 46 217 242 213 246 0.88 5 8 0.0033 44 4.9 0.1 21 44 246 269 241 273 0.87 6 8 0.0018 24 5.7 0.4 22 45 275 298 270 305 0.86 7 8 0.12 1.7e+03 -0.2 0.1 22 44 331 353 322 358 0.83 8 8 0.015 2e+02 2.7 0.4 26 48 363 385 350 388 0.84
Sequence Information
- Coding Sequence
- ATGGCTGACCCAGCAAATGAAAGTGACCTCCCAATAGAATACATACCCCAGGTTATAATAAAGGAAGAGTATGAAGAGGAGCCAGACTTCACAAATTCGGCAAACTCGGACAGTGAACAATCAATCACCGTTAAGATTGAACGATGTGAAGACATTCAGCAAATTTCAGTTCAGCCTGAATACATTTTGGGAGACCCTGATGATGGTGAACGGTGTCGGGAAGATGAAGATAGAATGAGAGAAGAAGctattaatattagtaaagatatgCTGCGGTCTTTAAAAATGAGGGTTAATGCACAAATACAAAGTCAGCATGAGAGCAGTGGTTCTGGGAGTGATGTGGCGGAATCTACTAATAAGTCTCCTTTGGATAatgTGATCCTGCCATGGCCAAAGGACTTGTTCATTATACCGTCGCGCAAGAAGTACAACAACGGCCAGAAGAGGTCCGTGTACAAAATTAAGGGTCTAACCTATGATTACAACCCGTATACTTGCGACTATTGTTCGATGGAATTCTCTCAAAGCAGCAACCTTAAAGCGCATTTACGCACTCACACCGGCGAGCGTCCGTATGTATGCGTCATATGCCATGCTGGCTTTACAAGTAGCAGTAACTTGAAGGATCACGTGCGTACTCACACTGGGGAAAAACCTTACACATGCCACATATGCCAAACCCCATTCGCTAACAGCTCGAGTCTTAAACGGCATGTACGGAGAATCCACACGAATGAAAAACCGTTTACATGCGAGGTATGTAAGCAACAGTTTTCGACCACTAGCAACTTGAAAATTCACTTTCGTACTCACACAGGGGAAAAATCGTTTATGTGCAGCATTTGTAAGGTGTGCTTCTCGCAGCGCAGCAATATGCGGTCTCACATGCGGACGCATATTGGTGAGCTGCGGTTTGAGTGTGAGATTTGTAGCGTTAAATTCTCGCTTCGGGGCGGTTTGAAGGCGCACATGAGGATGCATTTAGGGGATCGGCCTTTCAAGTGCGATGTCTGCAAGGCTCGGTTTACGTATAAGACGCTGTTGAGGGCGCATGTACGCACGCATACGGGTCAAAAGGTTTTCAATTGTAAAATGTGTCGAGCGGTTTTTGTGAGGACGAAAACACTAGAGAATCACATGAAGAGAGCCCATTGCGAGTCCAAATTGTTTCCGTGTGATAAATGTCATGTTTTCTTTCCTAGAACAAGCATGCTTCGTGATCATCCGTGCGTTGACGATATTAAGCGCGAACCGGAGTGTTTTACGTAA
- Protein Sequence
- MADPANESDLPIEYIPQVIIKEEYEEEPDFTNSANSDSEQSITVKIERCEDIQQISVQPEYILGDPDDGERCREDEDRMREEAINISKDMLRSLKMRVNAQIQSQHESSGSGSDVAESTNKSPLDNVILPWPKDLFIIPSRKKYNNGQKRSVYKIKGLTYDYNPYTCDYCSMEFSQSSNLKAHLRTHTGERPYVCVICHAGFTSSSNLKDHVRTHTGEKPYTCHICQTPFANSSSLKRHVRRIHTNEKPFTCEVCKQQFSTTSNLKIHFRTHTGEKSFMCSICKVCFSQRSNMRSHMRTHIGELRFECEICSVKFSLRGGLKAHMRMHLGDRPFKCDVCKARFTYKTLLRAHVRTHTGQKVFNCKMCRAVFVRTKTLENHMKRAHCESKLFPCDKCHVFFPRTSMLRDHPCVDDIKREPECFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01042029;
- 90% Identity
- iTF_01042029;
- 80% Identity
- iTF_01042029;