Nkoe012060.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nemapogon koenigi
Gene Symbol
-
Assembly
GCA_963924495.1
Location
OZ004641.1:6256352-6267783[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0001 0.0071 17.3 0.1 3 23 130 150 129 150 0.97
2 16 9.3e-07 6.5e-05 23.7 1.2 1 23 156 178 156 178 0.99
3 16 5.6e-06 0.00039 21.3 2.7 1 23 184 206 184 206 0.99
4 16 3.2e-06 0.00022 22.0 2.2 1 23 221 243 221 243 0.98
5 16 8.3e-05 0.0058 17.6 2.9 1 23 258 280 258 280 0.98
6 16 5.3e-07 3.7e-05 24.5 1.6 1 23 295 317 295 317 0.98
7 16 1.3e-06 8.7e-05 23.3 2.0 1 23 347 369 347 369 0.99
8 16 0.16 11 7.3 1.8 1 23 376 398 376 398 0.98
9 16 6.3e-07 4.3e-05 24.3 2.3 1 23 404 426 404 426 0.99
10 16 0.043 3 9.0 1.8 1 23 433 455 433 455 0.98
11 16 2.6e-06 0.00018 22.3 1.5 1 23 461 483 461 483 0.99
12 16 0.0039 0.27 12.3 0.8 1 23 490 512 490 512 0.99
13 16 2.9e-05 0.002 19.0 1.5 1 23 518 540 518 540 0.98
14 16 0.0021 0.14 13.2 0.3 1 20 546 565 546 568 0.93
15 16 8.1e-05 0.0056 17.6 1.1 2 23 575 596 574 596 0.96
16 16 3.6e-06 0.00025 21.9 1.4 1 23 602 625 602 625 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAACAAATCAAAGCGGAGCCTATGAGCTTTTACTCTTCACACCCCCATGTCCACTCCGGGACTACAATAGTAAGATCAGACTCCGGCCACCCCATCCTCAATGTGGGTCAGCATCATCTCCACCAAGAGGACTCCAAAGACAGTCTCATACACCAACAAGTGCCGCACCCAGATATGCTGGACCATCACCATCAACAAGATATGCATCATCATGATCCACATGATGATGATCTTAGTTTCAAAGGAATGGATGACGATGGAGTTGATTTGGAGATGGGAAGACAATGTTCACAAGGAATGGTGGACATGGAAACTGTACCAAAACTAGAAGTATCAAATGGAGGTACACAGACACCTAGATCTTCTAAACCTCAAGCTTGCAAAGTTTGTGGTAAAGTTCTCTCTTCAGCTTCTTCCTACTACGTTCATATGAAACTGCATTCTGGAAATAAACCCTTTCAGTGTACGGTATGCGACGCCGCGTTTTGTCGTAAACCGTACCTAGAAGTTCACATGCGTACCCACACTGGCGAGCGACCATTCCAGTGCGAACTTTGTCTCAAGCGCTTCACTCAGAAGTCAAGTCTTAATACGCACAAGCGCGTTCACACTGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCATACCAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGTTCCAGCCTCAACAGACACAAGAAAATACACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGCCCGTACCAGTGCCACGTCTGTTATATGCGCTTCACTCAGAAGTCCAGCCTCGGGCGTCACGGGAAAATTCACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTTTCAATGCGACATCTGTGACAAGAGGTTCACTCAGAAGTCCAGCCTGGGCACTCATAAACGTATACATACTGTGCGGGCCCGCTGCGCCCTCGCGCCCGCGCCTCCACCACGCGCGCTGGACTCTGACATGAGCACGCACACAGGCGAGCGGCCGTATCAGTGCCAGGCGTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATTCATATGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCGGCGGCCTTCACCTGCAAGCAGTACCTCGAGATCCACAACCGCACCCACACCGGCGAGCGACCTTACCAGTGCGACATCTGCCTCAAGCGCTTCACTCAGAAGTCCAGCCTGAACATCCACAAACGGACCCACTCAGTTCAGGGGCGCCCCTTCCAGTGTCTGCAGTGTCCAGCCGCCTTCACCTGCAAGCAGTACTTGGAGATCCACAACCGCACCCACACCGGCGAGCGGCCCTACCAGTGTGACGTGTGCCTCAAGAGGTTCGCCCAGAAGTCCACGCTCAACATCCACAAGAGGACGCACACAGTCCAAGGACGGCCCTACCAGTGCATGGAGTGTCCGGCCGCGTTCACCTGCAAGCCCTACTTGGAGATCCACACGCGCACCCACACTGGCGAGCGGCCATTCGAATGCGACGTTTGTATGAAACGCTTCACACAAAAATCTACTCTCAACATTCACAAGCGAATACATACCGGAGAACGTCCGTATGCATGTGATATCTGTCAAAAGAGATTTGCTGTAAAGAGCTATGTAACAGCGCACAGATGGTCTCACGTGTCGGACAAGCCCCTGAACTGTGACCGGTGTTCCATGACATTCACATCCAAGTCTCTGTTCGCGCTTCACATTCGCACTCACTCGTCCGGCTCTTGCTACGAGTGTAGCGTGTGTGGACGGACCTTCGTCAGGGACAGCTATCTTATAAGGCATCACAACCGAGTGCATCGCGAGAATCATAGCAACGTGTCGGCGAACAGTATCGCTACCATCAACAGTGTTGCCACCAACGTTAACAACGGAAACTATGACGCTTCGGGAGTCTGTGATCTaagTTTCGTGCCAATGGTGAACAGATATATGACATCTCAGGGCACGCAGGTGTCCATGCAGGATACTTCGAGCAAATTGTCAGCATTGTCACCGCAGTCGATTGCGTCGATATCATCGCCCCCGCCTCCTCATACGCCGACTCCGCAGCCAATGTCTGGGCAGATGCACCTCACTGACTGA
Protein Sequence
MFEQQIKAEPMSFYSSHPHVHSGTTIVRSDSGHPILNVGQHHLHQEDSKDSLIHQQVPHPDMLDHHHQQDMHHHDPHDDDLSFKGMDDDGVDLEMGRQCSQGMVDMETVPKLEVSNGGTQTPRSSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCELCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYQCELCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHVCYMRFTQKSSLGRHGKIHTEEHIQSLINKVRPFQCDICDKRFTQKSSLGTHKRIHTVRARCALAPAPPPRALDSDMSTHTGERPYQCQACLKRFTQKSSLNIHMRTHTVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHTRTHTGERPFECDVCMKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVSDKPLNCDRCSMTFTSKSLFALHIRTHSSGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIATINSVATNVNNGNYDASGVCDLSFVPMVNRYMTSQGTQVSMQDTSSKLSALSPQSIASISSPPPPHTPTPQPMSGQMHLTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00686557;
90% Identity
-
80% Identity
-