Nkoe005379.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_963924495.1
- Location
- OZ004633.1:1193989-1206277[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-75 1.2e-70 238.8 23.2 1 295 107 389 107 394 0.86 2 2 0.33 8.9e+03 -3.8 10.2 119 170 405 456 399 468 0.53
Sequence Information
- Coding Sequence
- ATGGGTAACAGTCCCAAATGGGTGACTCCTCAATCATCTGAGGATGAAGAAGGGAAATTTACAGACGGCGATTTTGGGGACTCTGATGACGCTACTGTAACAGTCCCAGATACTAACACAGTAATCATGCCAGTTAACGAGACGGTTAATGTCGTGGCTAGAAACTCCCAAGTCGACATTGATTATGCCAACGGAGATGATGGCAGCGATAGTGGAACTGAACAAGTAAACAATGGCCACGAGATCGTGTCCCGTCGTTCGTCGAATGAAGATTACAACCCGTCCATAGTTGGAATTATTGGCAACCAACACAATCATGCCGAGCAGCGACTGGCGGCGCGGCGGGCGGCCCGTGCTGAGGCTCGCGAGATCCGCATGCGAGAGCTGGAGCGGCAACAGCGCGAGCAAGAGAACCATGCTGATAAGGCCTACGATATGTACGCGGAGACGGTCACCAGACGCGGCCCAACGAGGATATCGACGCACGCACCGGCCGCGCTCACACCGCGACGAAGCTCTGAGGACTCGGCGGAAGACGGCTACTGTGTCAAGGACCTTAGGCACGAGCTAAAAGAGCTGGAGGAGAAGTTCAGGAAGGCGATGATCCTGAACGCGCAGCTCGATAATGACAAAGCGTCGCTCGGGTACCAGCTGGAGCTACTTAAAGATCGGATTGAAGAAATGCACGAGGAGCATGCACAGTTACAgCGCGAACACCGCGAGAAGTGCTCCGCCCACGAGCGGCTGAAGCGCGAACACGCGTCTCTAGAGCGGGACGTCATTCTAGCTCAGGACGGGTGTAGAGCGCGggaggcggcggcggcggcggcaggGTTGGCATTTGTGGAAGCCTCGTTGGAGAGCGCGCCGGAGTTGAGGGCGGTGGCCGAGTCGTTTGGCGCAGTGCCCCCGCTGGCGCTGGTCTCCAGGGTTGCTGAGGAGATGCTCAATGAAGCTGGCGATGGGAGCTTAGACGTCCGGTTGCAGAACATCCTCAACACCAAACAGTCTCTAGAGTCGGAAGTTCGCAAACTGAAGATACAGCTTCACGAGGAGAGAGCCGCGCGACAGAACGGGGTCGGACATCATGACGACCATTACGAGACGGAGGTGGAAAGTCTCCGGAAGTGCGTGTCTGAGGCCAAGGGGCGGGCGGCGCGCGCTGAGGCCGAGGCGGCTCTGCAGGGGGCGGCGGTCGCGCGACTCGAGGCGCAGGTCGCACGACTTAGAGCGCGACAGGATCATCACGACGAGCACGAGGAACAGCTCAAGCAGGAGCGACGGAAGCTGCAGCGGGAGGCGCGCGATGCGTTGAACCGTGTAGAGGAATTAGAAACGGAAAATAGTCACCTAACGAAGCGGCTGGATAAACTAAAGAATACCAAGTCTGCCTTGCTGAAGGACCTGTGA
- Protein Sequence
- MGNSPKWVTPQSSEDEEGKFTDGDFGDSDDATVTVPDTNTVIMPVNETVNVVARNSQVDIDYANGDDGSDSGTEQVNNGHEIVSRRSSNEDYNPSIVGIIGNQHNHAEQRLAARRAARAEAREIRMRELERQQREQENHADKAYDMYAETVTRRGPTRISTHAPAALTPRRSSEDSAEDGYCVKDLRHELKELEEKFRKAMILNAQLDNDKASLGYQLELLKDRIEEMHEEHAQLQREHREKCSAHERLKREHASLERDVILAQDGCRAREAAAAAAGLAFVEASLESAPELRAVAESFGAVPPLALVSRVAEEMLNEAGDGSLDVRLQNILNTKQSLESEVRKLKIQLHEERAARQNGVGHHDDHYETEVESLRKCVSEAKGRAARAEAEAALQGAAVARLEAQVARLRARQDHHDEHEEQLKQERRKLQREARDALNRVEELETENSHLTKRLDKLKNTKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -