Nkoe001733.2
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- bab1
- Assembly
- GCA_963924495.1
- Location
- OZ004629.1:21117080-21129553[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-16 9.3e-14 51.4 0.0 1 41 74 115 74 119 0.93 2 2 6.2 3.3e+03 -1.5 1.1 6 15 211 220 206 221 0.82
Sequence Information
- Coding Sequence
- ATGTTGATACATCGGACGAATATAAACTCGATAGGAACACATTCCTTAGAGGCTAAGCTGCTGGAGAATTCGCATGCCTGGTTGGGGGCTTCAACATCCTCAATCGCAGCAGATAGCTATCAGTATCAGCTTCAGTCTATGTGGCAAAAATGCTGGAATACAAACCAAAGTTTGGTTCACAACCTACGGTTCAGGGAGCGTGGACCTCTGAAATCTTGGCGACCAGAGACAATGGCTGAGGCTATATTCTCCGTGCTTAAAGAAGGACTTTCGCTGTCTCAGGCTGCTCGAAAATATGACATCCCATACCCGACGTTCGTCCTGTATGCCAACAGAGTTCATAATTTGCTGGGCCCGAGCGCTGACGGTGGAGCAGATTTGAGACCCAAAGGCCGCGGACGACCCCAACGTATTCTGCTGGGCGTGTGGCCCGATGAACATATCAGAAGCGTGATCAGGACTGTTGTCTTCCGTGATACTCATACTCCCCATACTCCACATCATATCAAAGAGGAGTCATTGCCTGTTTACCCGGCGATCACGGACGGCATAACCGTACCCAACACTTACGGCGGCATGGCGGTGTGCGGCAACGGACGCGAAGGCGGATTGTCACCGAACGCGGCAGCCGCCGCAGCAGTCGCGGCCGTCGCTCACGGTCTGCGCCGTCAGATGTGCAACATGGTGGTAGCTGCCCAGAGACCGGGCGAGCACCCCGCACACCTCACCCTGCCCCCGCTGCCGCTGCAATCTCCGCGCCTGCCGTCCCCGATGTCCACGGGACTCGAATCTCCGCTGTGCTCTCCGCCGCCGCCCGGCCACGCTCTCGAACCTCCCAAATCTACCGACCCGTTCAGGCCCTTCGCCTCCCCGCGCCCGGATAGTCGCTACATTCTGGAACGCGAGCCGACAGACACAGAGATGGGTCCCCCGAAGACCCCCATCGGATTGATCACTAAGAACGGCAAGGAGCAGCCACCGAGCCCGCTGCCCGTGAAGCTCGAGCTGGGCGGCGAGGCGCGCATAGAGCACATGTGA
- Protein Sequence
- MLIHRTNINSIGTHSLEAKLLENSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNLLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRSVIRTVVFRDTHTPHTPHHIKEESLPVYPAITDGITVPNTYGGMAVCGNGREGGLSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPGEHPAHLTLPPLPLQSPRLPSPMSTGLESPLCSPPPPGHALEPPKSTDPFRPFASPRPDSRYILEREPTDTEMGPPKTPIGLITKNGKEQPPSPLPVKLELGGEARIEHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- -
- 80% Identity
- -