Nkoe021707.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- -
- Assembly
- GCA_963924495.1
- Location
- OZ004655.1:5939454-5945939[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.7e-06 0.002 18.4 0.0 1 40 163 203 163 206 0.94 2 4 0.00011 0.062 13.6 0.0 4 40 236 272 233 274 0.87 3 4 0.8 4.3e+02 1.3 0.0 6 28 320 342 318 344 0.90 4 4 1.9e-05 0.01 16.1 0.0 2 38 376 413 375 417 0.87
Sequence Information
- Coding Sequence
- atgagCATTGATGAAGGGTCCTGTAGATGCTGCCTCCTTGTAGGTTCATTTTCCGATATGTGGCAAGAATATAACTGGCTTGGAGAAGTCGAAGTTTATGGAGACATGATAAAGGAATGTTTTGGTGTGTCGTTATCTCGATTTAATTCATCAATAACAAGGGACCAGATATGTGAAGATTGTATAATGCGTTTGCGAGACGCTTGGACTTTTAAAGAACAGATATTAAATTCCAATCAGCAATTGATTGAGCACATGACCaTAAACAACATGCAGTCAGATAATGAAGAGATTGAACACTTAGAAAGTAATGGTGATGGTTCTTGTAGTGATAAATCTGATTATAATTTAAGTGATGGCAGAGATGAGGCAGCAGACAGTGAAAAAACTTATGAGGTGATtgaatatttagaaaataaagAATCTGATGAAGTTAATGATGAATTACCAAAAGTAAGCAATAACAATGTATCCACTTTGAGATATACTGAAGAACAACTCAAATTATGCTTAGAAGCTGTTAAAGCTGGGCATCTAAACCAAGTACAAGCCGCAGAAACATTTAACATTCCTCGACAAACAATATGTTTCAGACTAAAACAAGAAACTGGTGATAATTATAAAGAAGTTGTATCCAGATGGAAGAAGGAGtccaaaataaaagaaaacgaTAGTAAAAAACTTAAGCTCCTAGAGAAAGAATCGAAACTGCATGAGTGCTTGGAACATGTAAAAGAAGGAAGTATATCAATGAAGGCAGCTTcaataaagtataaaatatccataaacactataaagaaAGCATGGCGCAAAGAGTACGGGCCTAATTATAATGACGCAATTACAgagattaaaaagaaatatgttGAGTATAAAAGGAATCACCAGGAGCCGAAGACCAGAAATCGATCAAATGGATGTGTAACTAAAATACTCAGACCGAGTAAACTTACTCTAATGCAAGCTGTAACTGATGTTAAAGACAAGAAGATATCAATACTTTCAGCATCTGCTCATTACAATATTCGTAGCAAATTACTGTCCAAAATAATTTCGCAAGACATTGATGTGTTTAAGACCGAGCCAGACCATATATTTTGGAACAGAGTTTTGAATAATTACACTGAAAGTGAATTAGCTAATTGTGTGGAAATGGTAAGAAAAGGTGTTATGACACAGAAAAAGGCTTCTGAGGTGTATCTTATACCTGAGGCTGTTATATCAAAGagtgtaataaaaagtattaacgATGGATTTATTAAAGAAGACTGTCTAAATGTAGTTCTACAATATACGAACGCAATCCCTTTTGAAGTTACCAAGAGTGGGTTTATGTGTGCTTACTGTTCAATTATTATCGATAATTGTGAAGAACTGAGATTGCATACACAGTTAGACCACAGCAACGCAAAAGACAACGAAATTAATAAAGCAGATATTATTAGATTAGacattttagatttaaaatgtGTAATTTGCGACAAATATATAGACCAATGGCACGAATTACAACTGCATTTCGcagaacataaaattaaaattattaattcggATAAAATAATTCCATATACGTTGTACCATGGGACGTATATATGCGCGTTGTGTGAAGAAATTTATCCTGACTTTAAAGTTCTTGATATGCACATGGATGAGcattttattaattatgtcTGTCAGAATTGTGGGCAGCCATTTTTTAATCTTACCAGACTGCATAGACACAAGCAATactgtaattataataaatatatatgcgATATTTGTGATAAAGAATTTAATGTGAAATATAATTTGAGAATTCATATAGAAGATCATATGCGGCCTTTGAAATTTTCTTGTAGCTACTGTACAAGTTCATTTGGTTCTGCATGCGAAAGGTATgtgcatataaaaaatgtgcatTCTGAAAAGCTGCGTCAATATCCTTGCAAGTTGTGTAATAAATTATTCAGTTGGAAGCCGTTTTATATGGCACATTATAGAATAATGCATGTTAGGAATAGTCGGTTTCAATGCAGTTCTTGTAGAGAAAAGTTTTATACACAGATTTCGTTGGAGAAACATACTATAAGACAACATCGCGTTTCAGTCAtaactttgtaa
- Protein Sequence
- MSIDEGSCRCCLLVGSFSDMWQEYNWLGEVEVYGDMIKECFGVSLSRFNSSITRDQICEDCIMRLRDAWTFKEQILNSNQQLIEHMTINNMQSDNEEIEHLESNGDGSCSDKSDYNLSDGRDEAADSEKTYEVIEYLENKESDEVNDELPKVSNNNVSTLRYTEEQLKLCLEAVKAGHLNQVQAAETFNIPRQTICFRLKQETGDNYKEVVSRWKKESKIKENDSKKLKLLEKESKLHECLEHVKEGSISMKAASIKYKISINTIKKAWRKEYGPNYNDAITEIKKKYVEYKRNHQEPKTRNRSNGCVTKILRPSKLTLMQAVTDVKDKKISILSASAHYNIRSKLLSKIISQDIDVFKTEPDHIFWNRVLNNYTESELANCVEMVRKGVMTQKKASEVYLIPEAVISKSVIKSINDGFIKEDCLNVVLQYTNAIPFEVTKSGFMCAYCSIIIDNCEELRLHTQLDHSNAKDNEINKADIIRLDILDLKCVICDKYIDQWHELQLHFAEHKIKIINSDKIIPYTLYHGTYICALCEEIYPDFKVLDMHMDEHFINYVCQNCGQPFFNLTRLHRHKQYCNYNKYICDICDKEFNVKYNLRIHIEDHMRPLKFSCSYCTSSFGSACERYVHIKNVHSEKLRQYPCKLCNKLFSWKPFYMAHYRIMHVRNSRFQCSSCREKFYTQISLEKHTIRQHRVSVITL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01042297;
- 90% Identity
- iTF_01042297;
- 80% Identity
- iTF_01042297;