Nsal017101.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- -
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000209.1:238247-239785[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0003 5.1 8.2 0.3 11 46 79 115 71 121 0.81 2 13 0.0033 55 4.9 0.1 21 46 118 143 114 150 0.85 3 13 0.24 4e+03 -1.1 0.0 21 44 146 169 142 172 0.78 4 13 0.0011 18 6.4 0.1 21 51 202 232 196 234 0.86 5 13 0.007 1.2e+02 3.8 0.1 21 44 230 253 226 257 0.89 6 13 0.00034 5.6 8.0 0.0 20 44 257 281 244 288 0.81 7 13 0.62 1e+04 -2.4 0.0 22 40 287 305 282 317 0.69 8 13 0.015 2.6e+02 2.7 0.1 21 44 314 337 307 342 0.86 9 13 0.00079 13 6.8 0.1 21 44 342 365 338 369 0.90 10 13 0.00043 7.2 7.7 0.0 21 45 370 394 366 400 0.90 11 13 0.51 8.5e+03 -2.1 0.0 24 44 401 421 394 424 0.77 12 13 0.11 1.9e+03 -0.0 0.3 26 46 453 473 446 481 0.76 13 13 0.036 6e+02 1.5 0.1 24 49 479 504 472 507 0.87
Sequence Information
- Coding Sequence
- ATGGAAAATGATGACGAGATGATTGACGTAAAAACAGAAAATGACGATAAATTAGATAGTGCGACAGTGGAACCGTTAGAGTTTATCGAAGTCGAAATGCACGATTCGAACGAAACGGAAAACGAGCAAACCGACCCGTTAAAAGTATCGAAAACAGTGTTAAAAACCATCAAATCGATTTCGAGCGATGACAAACGCAAGAAGAGAATCAACAGTAAACGGAAATGTAAACAAGTTACAGATTCACCGATGAGTTTCGAGCAAAGCGAGGAAAAAACGCATTTGTGCACGTATTGTAATAGTTCGTTTCGCCGTAAAAGCGACTTGACGCGCCATATACGCACGCACACCGGCGAAAAACCGTTCGCGTGCACTTACTGCGAAAGCTCGTTCAGCCAAAAGACCGACTTAACTCGTCACATCCGAACGCACACCGAAGAAAAACCGTTTCCATGCTCAGTTTGCGGAAGCTCGTTCAGTGAAAAAACCTACTTAAAGAATCATATGCGCACACATACCGGTGAGAAAACATACGCTTGTTCCGTGTGCGGTAAACTATTCGGCcgcaaattaatattaaacaatcaCATGCGAACGCACACGGGTGAAAAACCGTATTCCTGTAAAGTCTGTAACACATCATTCGCGCAAATTTCAAGCTTGAGGGGTCACATGAGGATACACACCGGTGAGAAACCATATGCGTGCACAATTTGCGCTAGTTCATTCGGCAAGAAACCGGATTTAACGCGCCATATACGGACGCACACCGGCGAGAAACCGTTCTCGTGTCCCGTGTGCGATAACGCGTTCAGTCAAAAAGCGTATTTGAAGAATCACATGACGACGCACACCGGCGAAAAATCGCATTCGTGCACGATTTGCGGCAGCTCATTCACGCGCAAAACCGGCTTAGTCAGTCATATGCGCACGCATACCGGCGAAAAGCCTTATAAATGCACGATTTGTAGTAATTCGTTCAGCACCAAACCGGATTTAACGCGTCATATCCGTACGCACACTGGTGAGAAACCATACGCGTGCGTAATCTGCGATAGATCATTCAGCCAAaatgtgaatttaaaaaaccatATGCGAACGCACACCGGCGAAAAGCCGTATTCGTGCATGATATGCGATAGCTCGTTCAATCAGAAAACTAACCTAAAAATACATATGCGCACGCACACCGGTGAGAAATTATACGCGTGCACTATTTGCGATAAATCGTTCAATGTTAAGATCAACTTAACGAATCATATGCAAACGCATGTGAGTGATACGTATTCGCGTGATAGTACGTTTATACCGACTGTGAATTTGAATAATCATTTGAGTATTGGTGATAGGATTTATGCGTGCACGATTTGTAATAGTTCGTTTAATCATATATCGCGTTTAACGCGACATATGCGCGTGCATAATGAGGAGAAATTGCATTTGTGCACGATTTGCAAAAGTACGTTTCCCATCAAAGCGAATTTAGCGCTGCATATGAAACAAACGCATTTTATTGCAGATGATCTTAATGGTTTTTAG
- Protein Sequence
- MENDDEMIDVKTENDDKLDSATVEPLEFIEVEMHDSNETENEQTDPLKVSKTVLKTIKSISSDDKRKKRINSKRKCKQVTDSPMSFEQSEEKTHLCTYCNSSFRRKSDLTRHIRTHTGEKPFACTYCESSFSQKTDLTRHIRTHTEEKPFPCSVCGSSFSEKTYLKNHMRTHTGEKTYACSVCGKLFGRKLILNNHMRTHTGEKPYSCKVCNTSFAQISSLRGHMRIHTGEKPYACTICASSFGKKPDLTRHIRTHTGEKPFSCPVCDNAFSQKAYLKNHMTTHTGEKSHSCTICGSSFTRKTGLVSHMRTHTGEKPYKCTICSNSFSTKPDLTRHIRTHTGEKPYACVICDRSFSQNVNLKNHMRTHTGEKPYSCMICDSSFNQKTNLKIHMRTHTGEKLYACTICDKSFNVKINLTNHMQTHVSDTYSRDSTFIPTVNLNNHLSIGDRIYACTICNSSFNHISRLTRHMRVHNEEKLHLCTICKSTFPIKANLALHMKQTHFIADDLNGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041081;
- 90% Identity
- iTF_01041081;
- 80% Identity
- iTF_01041081;