Nsal011187.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- -
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000090.1:220637-224726[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0098 0.95 10.9 3.5 1 23 522 545 522 545 0.98 2 12 0.23 22 6.6 5.2 2 23 564 585 563 585 0.97 3 12 0.00083 0.081 14.3 0.5 1 23 588 610 588 610 0.98 4 12 0.076 7.4 8.1 1.0 3 23 654 674 652 674 0.97 5 12 0.19 19 6.8 5.2 1 23 680 702 680 702 0.94 6 12 4.2e-05 0.0041 18.4 5.9 2 23 711 732 710 732 0.96 7 12 1.5e-06 0.00015 22.9 0.9 1 23 738 760 738 760 0.98 8 12 0.12 12 7.5 0.5 1 23 769 792 769 792 0.93 9 12 0.22 21 6.7 5.5 2 23 799 820 798 820 0.97 10 12 4.3e-05 0.0042 18.3 1.1 1 23 826 848 826 848 0.97 11 12 1.2e-06 0.00012 23.2 1.7 2 23 854 875 853 875 0.97 12 12 0.0025 0.25 12.8 6.2 1 23 882 904 882 904 0.96
Sequence Information
- Coding Sequence
- ATGCCGTACAAAGGTGATTCCACCTGGTGCGGCGCTAAGAATTGTGAAATTCGTAAAAAACGTTCGAAACTAGACGTAAAAGTTAGTTTCTTCAGATTTCCAAAAGAACCCGACAGATTAAAACACTGGATTGAAAATACAGAACGATACGATTTGATAGATAAATCACCTCAATACTGTCACTTGAATGTTAGGCTATGTGGATCGCACTTTGAGGATAAAATGTTTCTCAATGATGTACAGAATAGGCTACAACCACATGCAGTTCCTACCGTTTTTCCCGGTTCCAGAAAATTTCTATCTTTTCCTCAAAGAACTTGTTGCGTTCCAAATTGTTTTATTCCTGGAGATAGTTACGTTGGTTTTCCAGTTAAAAAACCAGAATTATTGAAAATCTGGCTAGAGAATATAAACTATCCGAGTTTATTATCACTATCTTATAATGAATTACTAAAAAAACACGTTGTATGCTCGAGacattttgaatcgaaataCGTAGAAATGTGTCGAATACAATCAAAATCATACGTCGTTACCATAGATGCTATTCCAACACTACATTTAAACGActCTATAGAACCAGGCAGTGATATTTTGGAAAATTCAGCAATTGAAAAAGTTGACTTGCCGGATAAAATgGATGCtgaaaatacgaaaataaatacgttaTTCGCGAATTATTATAGTAAAGATGAGAATGAAACGAAAACAATAGAGCTACATGATAAAACGGACTTATTAGATGCTGAAGATTGTATCGAAATTGATATAAAGTCGGATTCGATTTTAAAATCGATATTATTGGGAAGTAAACACGTTGACAAAACGTATGAAAAACATATAGTTCCTGAGtctattttaaacaatagcgATGAtcttatttcaaattctattAAGGAAGAAGAACAAACAGattACATCGTCGACATTTTAGAGCCTTTAGCAACCTATTGTAGATTTTGCGCAAATATTTACCCAGCTACTGATCTAAAATCAGTATTCAATGATGATCTTAGTGAagaatatttagaaattttaaacctatATATGCCTGGAATGATTAATAAGGACGATAACTTACCTCAAGAAATTTGCGAATCATGTTTGAGCAAACTGGAGTCTTGTTTGATTACTTTAAAAAGCTTTGAAAAAGCGTACGAAGAtctcaaattattatttagtacgACTTATGACACTGAAATCGACACCAAAAATACcgaaattgaattatttaacgaTATTTTACCTATATTAGAATCTATTCCAGAACAAAAgtTAGTTCCAATTCTTACACCAGAAGAAGTTATAGAAACATCTGAGCTCGAGCAAAAATTAACTGAATCAATAATCACAATTGATGACACGGAAATCGTAACACATTGTTGCTTAAAATGCGATGCGCAATTCGAAAATCACCAAGACTTTCTTGACCATTCATTTCGCATACACTTGATGACAAAAGCGGACAAAATCGTTTCTCGAATAATAAGATCGAAAAAACCAATTTCAAATACCGAACCATCCGATTCGTTAATGGATCAACTAGATTCGTATCacattaaatatgaatgtttaaTTTGTCATGTGTTGTTCGATAAAAAACATTCTCTCGTACGTCACACCATGACGAATCATTCCACAGCGAAAAGGGTTAAATATTCTGGTCGCATGATCCGTACTGATGTGATTAAATGCACACGATGCACCGAAACGTTCCAGAACTTGAATTCGTACCATCAACATACTAAGAAGCACATTCCGTTTAAATGCGATGAATGTGGAATCTGGTTTAATAGACAACAAAAATTAGCTATACACCGGAAATCGCATGGTACGACGAGCTCAGATCAATCAATCAAATTGGAAAATACGGAAAGCAGTTCAaggaatatatataaaaatagtggTGAAACGCAAAAGAAGTATAAAGCAAAGAAAAAGACTCAAAAATCGCTTTTGTGCAATATATGTGGCACACTGGTGAAAAACCATTACTATATGAAGTACCACCAATTGGTGCACACCAACGAGCGCCCCTTTAAATGTGATTTATGCCCTAAACGTTTTAAAATCCAGAATCATCTCGATTTCCACCATAAAATACATGAAGACACCGGCGAGCGTAATTGCATGTGCCAAATGTGCGGTAAATGTTTCCGTACGACCGCTTTACTGCGCAAACACATCCAAAGACATTCCGATAATAAGCAATATGTATGTGAAGTATGTGGCTACGCGTTTAGAACGTCATTTTTACTAGAACGACATCGGAAGAAACACAATTTTATAGCTGAAATCAGAAACCATATGTGTAGAATTTGTGATGTGATAGTGGATAGTTTTAATGGTCTCAACAGGCATATGAGTGAAAAACATGATGGCGCCAAAGCACTTGAGTGTGATGTTTGCCACAAGTTATTCAGTAAGCAATTGCTTCTAAAGTGCCACAGACGCACCCATACCGGTGAACGTCCATTTCAGTGTCAGCAATGCTATAAAGCATTTACAACAAATGCGCTGTTGAAACAACATAAAGCCGTGCATGAAAAACAGGCAATGCAGTGTGATATTTGCGATAAAAAATTCCGAAGATTATGGAACTTAAAGGCACACCGGAAAAAACATACGGCCACGAAAACGCAACACGTTTGtttgatttgcaaaaaaatgtttaattctcACGCAAATTTGAACAAACATTTTCACGTACACCAAATCAAGAGTAAAAAGGCGATTGTTACATCTGAAGaagaaaatgataatattgaatatttggATGCACATTTAGACGAAATCGAAGAACCAAATGGTTTGACGACTTTTTCTGAAACAGTTTTGGATTCGTCAGGGTTTGAAAATCCTGATTACAAGTCACCACCCGATCAAATTTTAACtacaaaaactattattattcaagctaaaaatatgaaacaaatcaaatttaaactagtgcaataa
- Protein Sequence
- MPYKGDSTWCGAKNCEIRKKRSKLDVKVSFFRFPKEPDRLKHWIENTERYDLIDKSPQYCHLNVRLCGSHFEDKMFLNDVQNRLQPHAVPTVFPGSRKFLSFPQRTCCVPNCFIPGDSYVGFPVKKPELLKIWLENINYPSLLSLSYNELLKKHVVCSRHFESKYVEMCRIQSKSYVVTIDAIPTLHLNDSIEPGSDILENSAIEKVDLPDKMDAENTKINTLFANYYSKDENETKTIELHDKTDLLDAEDCIEIDIKSDSILKSILLGSKHVDKTYEKHIVPESILNNSDDLISNSIKEEEQTDYIVDILEPLATYCRFCANIYPATDLKSVFNDDLSEEYLEILNLYMPGMINKDDNLPQEICESCLSKLESCLITLKSFEKAYEDLKLLFSTTYDTEIDTKNTEIELFNDILPILESIPEQKLVPILTPEEVIETSELEQKLTESIITIDDTEIVTHCCLKCDAQFENHQDFLDHSFRIHLMTKADKIVSRIIRSKKPISNTEPSDSLMDQLDSYHIKYECLICHVLFDKKHSLVRHTMTNHSTAKRVKYSGRMIRTDVIKCTRCTETFQNLNSYHQHTKKHIPFKCDECGIWFNRQQKLAIHRKSHGTTSSDQSIKLENTESSSRNIYKNSGETQKKYKAKKKTQKSLLCNICGTLVKNHYYMKYHQLVHTNERPFKCDLCPKRFKIQNHLDFHHKIHEDTGERNCMCQMCGKCFRTTALLRKHIQRHSDNKQYVCEVCGYAFRTSFLLERHRKKHNFIAEIRNHMCRICDVIVDSFNGLNRHMSEKHDGAKALECDVCHKLFSKQLLLKCHRRTHTGERPFQCQQCYKAFTTNALLKQHKAVHEKQAMQCDICDKKFRRLWNLKAHRKKHTATKTQHVCLICKKMFNSHANLNKHFHVHQIKSKKAIVTSEEENDNIEYLDAHLDEIEEPNGLTTFSETVLDSSGFENPDYKSPPDQILTTKTIIIQAKNMKQIKFKLVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01039631;
- 90% Identity
- iTF_01039631;
- 80% Identity
- iTF_01040916;