Basic Information

Insect: Nebria salina
Gene Symbol: -
Assembly: GCA_944039265.1
Location: CALUEJ010000185.1:124244-128411[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.5 2.4e+02 3.4 0.5 1 23 302 325 302 325 0.88

2 16 0.00044 0.043 15.1 1.8 1 20 340 359 340 361 0.95

3 16 0.24 23 6.6 2.4 2 23 370 391 369 391 0.89

4 16 0.11 11 7.6 0.3 2 23 399 421 398 421 0.92

5 16 1.5e-05 0.0014 19.8 0.3 1 23 427 449 427 449 0.97

6 16 0.039 3.8 9.0 1.7 1 23 455 477 455 477 0.94

7 16 4.4e-06 0.00043 21.4 3.1 1 23 483 505 483 505 0.99

8 16 1.5 1.5e+02 4.0 0.0 1 13 515 527 515 536 0.92

9 16 0.032 3.1 9.3 4.2 1 20 553 572 553 575 0.94

10 16 1.9 1.8e+02 3.7 5.7 1 23 581 603 581 603 0.94

11 16 1.4 1.3e+02 4.2 4.0 1 23 621 644 621 644 0.93

12 16 0.0018 0.17 13.2 0.3 1 23 651 674 651 674 0.98

13 16 0.00015 0.014 16.7 1.8 2 23 680 702 679 702 0.96

14 16 8.6e-06 0.00083 20.5 0.5 1 23 710 732 710 732 0.98

15 16 3.2e-06 0.00031 21.9 1.4 1 23 738 760 738 760 0.98

16 16 9.5e-06 0.00092 20.4 2.3 1 23 795 817 795 817 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.5	2.4e+02	3.4	0.5	1	23	302	325	302	325	0.88
2	16	0.00044	0.043	15.1	1.8	1	20	340	359	340	361	0.95
3	16	0.24	23	6.6	2.4	2	23	370	391	369	391	0.89
4	16	0.11	11	7.6	0.3	2	23	399	421	398	421	0.92
5	16	1.5e-05	0.0014	19.8	0.3	1	23	427	449	427	449	0.97
6	16	0.039	3.8	9.0	1.7	1	23	455	477	455	477	0.94
7	16	4.4e-06	0.00043	21.4	3.1	1	23	483	505	483	505	0.99
8	16	1.5	1.5e+02	4.0	0.0	1	13	515	527	515	536	0.92
9	16	0.032	3.1	9.3	4.2	1	20	553	572	553	575	0.94
10	16	1.9	1.8e+02	3.7	5.7	1	23	581	603	581	603	0.94
11	16	1.4	1.3e+02	4.2	4.0	1	23	621	644	621	644	0.93
12	16	0.0018	0.17	13.2	0.3	1	23	651	674	651	674	0.98
13	16	0.00015	0.014	16.7	1.8	2	23	680	702	679	702	0.96
14	16	8.6e-06	0.00083	20.5	0.5	1	23	710	732	710	732	0.98
15	16	3.2e-06	0.00031	21.9	1.4	1	23	738	760	738	760	0.98
16	16	9.5e-06	0.00092	20.4	2.3	1	23	795	817	795	817	0.98

Sequence Information

Coding Sequence: ATGCACGATAGTCTAGAAAATACGGCCGAAAATTTTTACGCCGATTCTTCGTTGATGGTCATGAACCAAGATCAAAACGGTGAATTCAATCACGTTTTGAGTGAAAACATATTCGAATCCACCGACGACTATccacaacaaacaaataaaacaaacgcAGATATCACTTTATACGGTGCAGATGATTCAGTTCTTATAACGAACGAATATCAATTGATAGAACCAAGCGCACTTGAAAACGATGTAACTCAAGAAAAGATTGATGTATCTACCATAAAAGAATCGCCAGGAAATACTTCCCTAAAAGATGATCAGACTGATCAAAGCTATAATTATATGgatattgaatcaaaattgcGGGAGATTCACGATTATAACGATGAACTTTTAGGTGATTTTTGTCGGTTGTGTGCTAGCAGTGTAAAAGAAACAGCTTCAACTAATATTGCTTGTGATAAATTGGAAGAAATGGTTAATTTTGCATTGCCTATTAAAGTAGCTAGCGCAGATGGTTTGCCACAGCAATTATGTGAAACTTGTGTTGAACgggttaaaatttgttatcaATTTGTAAGCACTGTACAAGGAGCAGACAAAATATTacgattaaaatttatgTCTTCACAAACTTCACCTCCCAATTTGCAAGAAAGTAGTGCCGTTGATTTTATGACCGACTTCCTTAGTTCCCCAGCAAATAAAGTCAATTTGGATGAAAAACtacaaattaaagaaaaagaagaaaccCCAGACTGTAACGAAATCGAATACCTGAACttggaatcgattcaaaataaatcagaACCAGAACCAACAGTAAATTGTCGCATATGTGATTTAGCTTTGGATACAGTGGAGCATGCAATCATTCACAGTACAAGTGAACACTTGATAGACGATTTATATGCTTGTCCATTTTGCGAATACGGATTCATGGCTCAGAGTGAACACAAAGAACATATTACCAACGACcaccaaataaaattcgaGGTAACAAACACGCGGAAGGTACGCTGTTTTCAGTGTACTGTTTGTTCAAAAAAATACAGTTCACAAATCCAATTAGAGAAACATACATGCGCCACGGTTACCACCAACAAAACATTGCACTGTGAGATTTGTAACCAGTCGTTTCCGACAAAAGTTCGATTGAATTTCCATCgacaatttcatttaaaagaCGCTCGACCACTATATTGTGCAATGTGCAATATTACATTCGATgatgaaaatgaatttttcgATCACGTTAATTTCAAGCACGAATCAAAACAAGTATTTCCTTGTGGTATTTGTGGTAAAACATTCAGTATTCGTTCGGCGTTGAACGACCATAAAAAACAGCATAAAGAATCTCGGACTCATGAGTGTAATATATGTTTCAAGTCGTTCCTGGACCGGCAAACTTTGCGTGAACATGAAGTTAGCCATATGACAACAGCGCCGTATCAGTGTCATATATGTGGAAAGAATTTAAATCGTTCGAGTCGATTGAAGCGACATTTGCTAACGCACGAATCTAATCCAGTGCTGAGCAATGTTCATAATTGTAACTTGTGCAAAGAAGTATTTGCTAATAATAACATTGCGGATATCCATCGAACTAGTCAGCATGAGAATGTAAATTGCATTGAGGTCATCAGTACGGATAAAGTGTTTCGGTGTGAATTCTGCGAGAAATGTTACAGCTCACCGACGGCATTGAACGGCCATCGCATTTGTCATTCAGGACTTACACCGTATACTTGCCATATTTGCAAAGCACAGTTTTCAACTTATGCCAGaTGTATATCTCATAAAAATACTCATGGTTTATATAAGGATGGAGCAGAAAAAGATAATTTTCCTGTAGTGAAACATTTCCTTTGTGAACAATGTGGAAAGTCCCATTTGCATTGGAGTTACCTaaATCTTCATCGACGTTTGAAACATTCTGAAaatgcacatacatataaatgtaatgaATGCAATATAGAATTTCCCACCAGCTGGGCAATTGCATATCATCGAAAGACCAAACATAACCAGGACCAATGCAAATGTGAAGATTGCGGGAAAGTTCTATCAAATCTCCAATCGTTGAAACTACATCGGTTGACTCAACATTCCAATAAAAGATCAAATGATTTTAGATGTGATAAATGCGGCAAACTTTTCGTCCAACAAAGTTCCCTGGATGCCCATTTAAAACTGCATCAAGGCATCCGAGACTTTAAATGTACCCTCTGCCCGAAAAGTTTCGTACACCCATCCGGCTTATCAAGTCATATTAAGCAGCACCAGTCGCAGAAATTAAAACCATCGAATAGCAGATCTATTCTAAGATCTGGTCTAAAACTGGCCGATGAAGGCTATACGAAAACCAACAACACCGAACGTCCATACACATGCAATGAGTGTGGTCTCTCCTTCAAACGACTGTTCACCTTGAAGAATCATACACTCAAACACAGCCAAACTCCAGATACCAGCAGTTTTGTACTTATGGTTGACATGAAAGAAGATTGCAATGCAGAAAACGAGAACTCGACTCAACACGTACAACCACCACAACTCATCCAACAAGATAATGGAGCAcaagataatatttatgttcaaTATGACCCGGAAACTGATTCGTCCACTAATTACATCGATATAGGACATGGAAATTATCTTCAAGTAATGGGCAATACATTGAATATTGTTGGAgcagataataaaataacagataCAAATCATGCATTTGAAATGATCGTTGATGAGACGTTACGAGAGGAAGACCCTGTGATTCCAGGAAATTTGGCGATTGAACAACAGTACGATAACAACACTGTTATGTTAGTAAATTCGGAAAATTCATCGTATATATTGAAAGAAAATGAGGTCCAACCGCAATATGTTTTCACTACTATGGAAAAATCACTGCAAAAAGCTGCTACAACGTACGTAATTGGTAATCAGTTTATGTTAGAAGCTGATGaccaaacattttaa
Protein Sequence: MHDSLENTAENFYADSSLMVMNQDQNGEFNHVLSENIFESTDDYPQQTNKTNADITLYGADDSVLITNEYQLIEPSALENDVTQEKIDVSTIKESPGNTSLKDDQTDQSYNYMDIESKLREIHDYNDELLGDFCRLCASSVKETASTNIACDKLEEMVNFALPIKVASADGLPQQLCETCVERVKICYQFVSTVQGADKILRLKFMSSQTSPPNLQESSAVDFMTDFLSSPANKVNLDEKLQIKEKEETPDCNEIEYLNLESIQNKSEPEPTVNCRICDLALDTVEHAIIHSTSEHLIDDLYACPFCEYGFMAQSEHKEHITNDHQIKFEVTNTRKVRCFQCTVCSKKYSSQIQLEKHTCATVTTNKTLHCEICNQSFPTKVRLNFHRQFHLKDARPLYCAMCNITFDDENEFFDHVNFKHESKQVFPCGICGKTFSIRSALNDHKKQHKESRTHECNICFKSFLDRQTLREHEVSHMTTAPYQCHICGKNLNRSSRLKRHLLTHESNPVLSNVHNCNLCKEVFANNNIADIHRTSQHENVNCIEVISTDKVFRCEFCEKCYSSPTALNGHRICHSGLTPYTCHICKAQFSTYARCISHKNTHGLYKDGAEKDNFPVVKHFLCEQCGKSHLHWSYLNLHRRLKHSENAHTYKCNECNIEFPTSWAIAYHRKTKHNQDQCKCEDCGKVLSNLQSLKLHRLTQHSNKRSNDFRCDKCGKLFVQQSSLDAHLKLHQGIRDFKCTLCPKSFVHPSGLSSHIKQHQSQKLKPSNSRSILRSGLKLADEGYTKTNNTERPYTCNECGLSFKRLFTLKNHTLKHSQTPDTSSFVLMVDMKEDCNAENENSTQHVQPPQLIQQDNGAQDNIYVQYDPETDSSTNYIDIGHGNYLQVMGNTLNIVGADNKITDTNHAFEMIVDETLREEDPVIPGNLAIEQQYDNNTVMLVNSENSSYILKENEVQPQYVFTTMEKSLQKAATTYVIGNQFMLEADDQTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01040320;
90% Identity: iTF_01039576;
80% Identity: -