Basic Information

Insect: Nebria brevicollis
Gene Symbol: -
Assembly: GCA_944739395.1
Location: CALYJC010000590.1:3532-7735[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 9.7 9e+02 1.6 0.6 1 22 298 319 298 321 0.76

2 16 0.00047 0.044 15.1 1.8 1 20 336 355 336 357 0.95

3 16 0.25 23 6.6 2.4 2 23 366 387 365 387 0.89

4 16 0.12 11 7.6 0.3 2 23 395 417 394 417 0.92

5 16 1.6e-05 0.0015 19.8 0.3 1 23 423 445 423 445 0.97

6 16 0.041 3.9 9.0 1.7 1 23 451 473 451 473 0.94

7 16 4.7e-06 0.00044 21.4 3.1 1 23 479 501 479 501 0.99

8 16 1.5 1.4e+02 4.1 0.2 1 13 511 523 511 534 0.87

9 16 0.034 3.2 9.3 4.2 1 20 549 568 549 571 0.94

10 16 2 1.9e+02 3.7 5.7 1 23 577 599 577 599 0.94

11 16 1.5 1.4e+02 4.2 4.0 1 23 617 640 617 640 0.93

12 16 0.0019 0.18 13.2 0.3 1 23 647 670 647 670 0.98

13 16 0.00016 0.014 16.7 1.8 2 23 676 698 675 698 0.96

14 16 9.1e-06 0.00085 20.5 0.5 1 23 706 728 706 728 0.98

15 16 3.4e-06 0.00032 21.9 1.4 1 23 734 756 734 756 0.98

16 16 1e-05 0.00094 20.4 2.3 1 23 791 813 791 813 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	9.7	9e+02	1.6	0.6	1	22	298	319	298	321	0.76
2	16	0.00047	0.044	15.1	1.8	1	20	336	355	336	357	0.95
3	16	0.25	23	6.6	2.4	2	23	366	387	365	387	0.89
4	16	0.12	11	7.6	0.3	2	23	395	417	394	417	0.92
5	16	1.6e-05	0.0015	19.8	0.3	1	23	423	445	423	445	0.97
6	16	0.041	3.9	9.0	1.7	1	23	451	473	451	473	0.94
7	16	4.7e-06	0.00044	21.4	3.1	1	23	479	501	479	501	0.99
8	16	1.5	1.4e+02	4.1	0.2	1	13	511	523	511	534	0.87
9	16	0.034	3.2	9.3	4.2	1	20	549	568	549	571	0.94
10	16	2	1.9e+02	3.7	5.7	1	23	577	599	577	599	0.94
11	16	1.5	1.4e+02	4.2	4.0	1	23	617	640	617	640	0.93
12	16	0.0019	0.18	13.2	0.3	1	23	647	670	647	670	0.98
13	16	0.00016	0.014	16.7	1.8	2	23	676	698	675	698	0.96
14	16	9.1e-06	0.00085	20.5	0.5	1	23	706	728	706	728	0.98
15	16	3.4e-06	0.00032	21.9	1.4	1	23	734	756	734	756	0.98
16	16	1e-05	0.00094	20.4	2.3	1	23	791	813	791	813	0.98

Sequence Information

Coding Sequence: ATGCACGATAGTCTAGAAAATACGGCCGAAAACTTTTACGCCGATTCGTCGTTGATGGTTATGAACCAAGATCAAAACGGTGAATTCAATCACGTTTTAAGtgaaaacatatttgaatCCACTGACGACTATCcacaacaaacaaataaaacaaacgcAGATATCACATTATACGGTGCAGATGATTCAGTTCTTATAACGAACGAATATCAATTGATAGAACCAAGCACACTTGAAAACGATGTCACTCAAGAAACGATTGATGTATCTACCATAAAAGAATCACCAGGAAATACTTCCCTAAAAGATGATCAGACTGATCAAAGCTATAACTATATGGATATTGAATCAAAATTGCGGGAGATTCACGATTATAACGAAGAACTTTTAGGTGATTTTTGTCGGTTGTGTGCTAACAGTGTAAAAGAAACAGCGTCAACTAATATTACCTGTGATAAATTGGAAGAAATGGTTAATTTTGCATTGCCTATTAAAGTAGCTAGCGAAGATGGTTTGCCACAGCAATTATGTGAAACTTGTGTTGAACGGgttaaaatttgttatcaATTTGTAAGCACTGTGAAAGGAGCAGACAAAATATTAcgattaaaatttttGTGTTCACCTCCCAATTTGCAAGAAAGTAGTGCTGATTTTATGACCGACTTCCTTAGTTCCCCAgcaaataaagtaaatttggATGAAAAACtacaaattaaagaaaaagaagaaaccCCAGACTGTAACGAAATCGAATACCTGAacttggaatcgattcaaaaTAAATCCGAACCAGAACCAACAATAAATTGTCGCATATGTGATTTAGCTTTAGGTACAGTGGAACATGCAATCATTCACAGTACAAGTGAACACTTAATAGACGATTTATATGCTTGTCCATTTTGCGAATACGGATTCATGGCTCAGAATGAACACAAAGAACATATTACCAACGACCACCAAATCAAATTCGAGGTAACAAACACGCGGAAGGTACGCTGTTTCCAGTGTACTGTTTGTTCAAAAAAATACAGTTCACAAATCCAATTAGAGAAACACACATGTGCCACAGTTACCACTAATAAAACATTACACTGTGAGATTTGTAACCAGTCGTTTCCGACAAAGGTTAGATTGAATTTCCATCggcaatttcatttaaaagatGCCCGACCCCTATATTGTGCAATGTGTAATATTACATTCGATGatgaaaatgaatttttcgaTCACGTTAATTTCAAGCACGAATCAAAACAAGTGTTTCCTTGTGGTATTTGCGGTAAAACATTCAGTATTCGTTCGGCGTTGAACGACCATAAAAAACAGCATAAAGAATCTCGGACGCATGAGTGTAATATATGTTTCAAGTCGTTCCTAGACCGGCAAACGTTGCGTGAACATGAAGTTAGCCATATGACAACAGCGCCGTACCAGTGTCACATATGTGGCAAGAATTTAAATCGTTCGAGTCGTTTGAAGCGACATTTGCTAACGCACGAATCTAATCCAGTGCTGAGTAATGTTCATAATTGTAACTTGTGCAAAGAAGTATTTGCTAATAATACTATTGCGGATAGCCATCGAACTAGTCAGCATGAGAATGTAAATTGCATTGAGGTTATCAGTACGGATAAAGTGTTTCGGTGTGAATTCTGCGAGAAATGTTACAGCTCACCAACGGCATTGAACGGCCATCGCATTTGTCATTCAGGACTTACACCGTATACTTGCCATATTTGCAAAGCACAGTTTTCTACTTATGCCAGATGCATATCACATAAAAATACTCATGGTTTATATAAGGATGGAGCAGAAAAAGATAATTTTCCTGTAGTGAAACACTTCCTTTGTGAACAATGTGGAAAGTCCCATTTGCATTGGAGTTACCTaaATCTTCATCGACGTTTGAAACATTCTGAAAATGCGCACACATATAAATGTAATGAATGCAATATAGAATTTCCCACCAGCTGGGCGATTGCATATCATCGAAAGACCAAACATAACCAGGACCAATGCAAATGTGAAGATTGCGGGAAAGTTCTATCAAATCTCCAATCGTTGAAACTACATCGGTTGACTCAACATTCCAATAAAAGATCAAATGATTTTAGATGTGATAAATGCGGTAAACTTTTCGTCCAACAAAGTTCCCTGGACGCCCATTTAAAACTGCACCAAGGCATCCGAGACTTTAAATGCACGCTCTGCCCGAAAAGTTTCGTACACCCATCCGGCTTATCAAGTCATATTAAGCAGCATCAATCGCCGAAATTAAATCCATCGAATAGCAGATCTATTCTAAGATCTGGTCTAAAACAGACCGATGAAGGCTATACGAAAACCAACAACACCGAACGTCCATACACATGCAATGAATGTGGTCTCTCCTTCAAACGACTGTTCACCTTGAAGAACCATACACTCAAACACAGCCAAACTCCAGATACCAGCAGTTTTGTACTTATGGTCGATATGAAAGAAGATTGCAATGCAGAAAACGAGAACACGACGCAACACGTACAACCACCACAACTCATCCAACAAGATAATGGAGCACAAGATAATATTTATGTGCAATATGATCCAGAAACTGATTCGTCCACTAATTACATCGATATAGGACATGGAAATTACCTTCAAGTAATGGGCAACACATTGAATATTGTTGGAGGTGATGATAAAATAACAGATACCAATCATGCATTTGAAATGATCGTTGATGAGACGTTACGGGAGGAAGACCCTGTGATTCCTGGAAATTTAGCGATTGAACAACAGTACGATAACAACACTGTTATGTTAGTAAATTCGGAAAATTCATCGTATATATTGAAAGAAAATGAGGTCCAACCGCAATATGTTTTCACTACAATGGAAAAATCACTACAAAAAGCTGCTACTACGTACGTAATTGGTAATCAGTTTATGTTGGAAGCTGATGAccaaacattttaa
Protein Sequence: MHDSLENTAENFYADSSLMVMNQDQNGEFNHVLSENIFESTDDYPQQTNKTNADITLYGADDSVLITNEYQLIEPSTLENDVTQETIDVSTIKESPGNTSLKDDQTDQSYNYMDIESKLREIHDYNEELLGDFCRLCANSVKETASTNITCDKLEEMVNFALPIKVASEDGLPQQLCETCVERVKICYQFVSTVKGADKILRLKFLCSPPNLQESSADFMTDFLSSPANKVNLDEKLQIKEKEETPDCNEIEYLNLESIQNKSEPEPTINCRICDLALGTVEHAIIHSTSEHLIDDLYACPFCEYGFMAQNEHKEHITNDHQIKFEVTNTRKVRCFQCTVCSKKYSSQIQLEKHTCATVTTNKTLHCEICNQSFPTKVRLNFHRQFHLKDARPLYCAMCNITFDDENEFFDHVNFKHESKQVFPCGICGKTFSIRSALNDHKKQHKESRTHECNICFKSFLDRQTLREHEVSHMTTAPYQCHICGKNLNRSSRLKRHLLTHESNPVLSNVHNCNLCKEVFANNTIADSHRTSQHENVNCIEVISTDKVFRCEFCEKCYSSPTALNGHRICHSGLTPYTCHICKAQFSTYARCISHKNTHGLYKDGAEKDNFPVVKHFLCEQCGKSHLHWSYLNLHRRLKHSENAHTYKCNECNIEFPTSWAIAYHRKTKHNQDQCKCEDCGKVLSNLQSLKLHRLTQHSNKRSNDFRCDKCGKLFVQQSSLDAHLKLHQGIRDFKCTLCPKSFVHPSGLSSHIKQHQSPKLNPSNSRSILRSGLKQTDEGYTKTNNTERPYTCNECGLSFKRLFTLKNHTLKHSQTPDTSSFVLMVDMKEDCNAENENTTQHVQPPQLIQQDNGAQDNIYVQYDPETDSSTNYIDIGHGNYLQVMGNTLNIVGGDDKITDTNHAFEMIVDETLREEDPVIPGNLAIEQQYDNNTVMLVNSENSSYILKENEVQPQYVFTTMEKSLQKAATTYVIGNQFMLEADDQTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01039575;
90% Identity: iTF_01039575; iTF_01041181;
80% Identity: iTF_01039575;