Nsal004898.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- -
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000029.1:1909951-1912078[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.25 24 6.5 0.5 3 21 221 239 220 240 0.92 2 14 0.0017 0.16 13.3 1.3 1 23 279 301 279 301 0.98 3 14 0.0012 0.12 13.8 3.9 1 23 314 336 314 336 0.96 4 14 0.0032 0.31 12.5 0.7 1 23 360 382 360 382 0.98 5 14 0.0015 0.14 13.5 0.3 2 23 389 410 388 410 0.96 6 14 0.00046 0.045 15.1 3.7 3 23 417 437 416 437 0.99 7 14 0.008 0.78 11.2 0.2 1 21 446 466 446 468 0.91 8 14 0.00011 0.01 17.1 2.7 1 23 473 495 473 495 0.97 9 14 0.13 13 7.4 2.3 1 23 500 522 500 522 0.94 10 14 3.7e-06 0.00036 21.7 1.3 1 23 528 550 528 550 0.98 11 14 5.2e-07 5.1e-05 24.4 1.9 1 23 556 578 556 578 0.99 12 14 0.00021 0.02 16.2 3.8 1 23 584 608 584 608 0.98 13 14 0.4 39 5.8 1.3 1 23 614 636 614 636 0.92 14 14 0.00033 0.032 15.6 9.4 1 23 642 664 642 664 0.97
Sequence Information
- Coding Sequence
- ATGGAATTAGATGTGGTTGTACGTTTACCGCAAGACGTACACAAATTGTGTCGTACGTGCATGGCTGTTACGGAAAATGATTTATCTCATGATATTTTACTCGTACAAGAACGAAGCACTACCATCGCTGGCGAAATGTTCATATCGTGTTATTCAATTCTGattttaccTGATGATGGTTTGCCGAAATCTATTTGCGACCAATGCGCTAGTAATCTAGAAATCGCGTATCGTTTTAAAACGCAATGTGAACAATCCGAGAGTAATTTAAGGGAGATATTAAACTTGCCCGAAACTCCAAACACCAAAAAAGAAGTTAAAGTGCCTAAGAAAGTAGGAGTTACTTTATACGACTCGAATTtagtacaaaattatattgaagatgaaattgaagaaaatcGATATGAGTTAGTCGATGGTGAATTTAGAGAAATTAATTCAGAAAATGATAGtataCAATTtgatataagtaaaataatcgGTGAAGATAATCAAATGGAAACTGAAGATAAAATCGGTAACgaagatatattttcgttaatagAAGAACGAAAACAATGCAAATCAAACCTAGATGAATTATGTGGTATACCAAATAACGAACAATTTGACGATATAAAACAAGAATTGTATAGCGATGACGAAATAATCgaaaacatttgtaaatattgcGAAATGATGTTTTCGTGTAATGAAGATTTACTAGACCATCAAGAAAGCTGTAACGTCGACCAAGACCATAAATCGATTCTAGAAAAGATATTAAAACTAGAAAACGGCACGTTGGAAAAAGTCGAGTTATTAGACGACGAAACGAACGATAATTCCCCACCATATATGTGCACAATGTGCGGAAGtcaattcaaatcaaaatatgcACGGAACGGGCACATGTCGACGCACGGTCCCGTTACCGAATTCGAAAAAGTCAAATACGAGTTTCATTGCGACATTTGCAAAAAAATCTTCTACTCGGAATCGAAATTAACTGCTCACTTCTACAAACATGCGATTGATATCGATCAAAAGCATCGCGACGCCGCGTTCTCAATTCCACAAAATGAGCGAAACGATACGTTCACTTGTCAGATTTGTGACGAGAAATGTGACAATGGAACCGCGTTAAGAGAACATATTGATAGACATGACAACCAAGACGCCATTAGTTGTGAAGTCTGTCATGGCGAGTTTAGCGGCCAAACGAATTTAATCAACCATTTACTAAGTCATGGAATTCAAATTTCCTTATGTAAAATATGTCATAAACGTTATGATACAATTACGAAATTAAAAGAACACATGAAAACCCATATAACTCATAACACACCCAATGTTTTTAAGTGTCCTATATGTAAAAGTGAGTTCGGAACAGTCGATGATTTAAAAACGCATTCCGTGGAACATTTAGGTGAATTTTTCGAGTGCAAAAAGTGTAAACGCAACTTTAGTAGCAAATCCGCGTTCGAAGACCATGAGAAACAACATAAAGAACCgcgatttttatgttttctgtgcggaaaacaatatttttcgaGTGTTACGTTGCAATGTCATATTCGTGCGCATAACAATGAGAAACCATTCGTTTGTCCGCATTGTCAAAAAGGGTTTTCGTCCCGCGCTACCTTATCAGTTCATAAACGAATACATTCCAAGTTAAAACCATATGTGTGCTCTTATTGCGGGTATAGTTGTCGGCAAAGTGGTGATCTAACGATGCATATCCGGACGCACACTGGCGATAAGCCGTATAAATGCTCATTCCCGAATTGTGATCGTAAATTTACAACTTCCAGTCAACGGAAAGAGCATTACCGGCGCCATACCAACGAACGCAATCATAAATGCATACTGTGCGCGAAAGCGTTTTTAGAATCGAAAACGCTTAAAGTGCACATGCTTACGCATACGGGCGAAAAACCGCATacttgtaaaatatgttcgaaAAAATTTAGACGCACTCACCACCTTTCAAACCATATGAAAGGACATAgggataataatattaaaatatag
- Protein Sequence
- MELDVVVRLPQDVHKLCRTCMAVTENDLSHDILLVQERSTTIAGEMFISCYSILILPDDGLPKSICDQCASNLEIAYRFKTQCEQSESNLREILNLPETPNTKKEVKVPKKVGVTLYDSNLVQNYIEDEIEENRYELVDGEFREINSENDSIQFDISKIIGEDNQMETEDKIGNEDIFSLIEERKQCKSNLDELCGIPNNEQFDDIKQELYSDDEIIENICKYCEMMFSCNEDLLDHQESCNVDQDHKSILEKILKLENGTLEKVELLDDETNDNSPPYMCTMCGSQFKSKYARNGHMSTHGPVTEFEKVKYEFHCDICKKIFYSESKLTAHFYKHAIDIDQKHRDAAFSIPQNERNDTFTCQICDEKCDNGTALREHIDRHDNQDAISCEVCHGEFSGQTNLINHLLSHGIQISLCKICHKRYDTITKLKEHMKTHITHNTPNVFKCPICKSEFGTVDDLKTHSVEHLGEFFECKKCKRNFSSKSAFEDHEKQHKEPRFLCFLCGKQYFSSVTLQCHIRAHNNEKPFVCPHCQKGFSSRATLSVHKRIHSKLKPYVCSYCGYSCRQSGDLTMHIRTHTGDKPYKCSFPNCDRKFTTSSQRKEHYRRHTNERNHKCILCAKAFLESKTLKVHMLTHTGEKPHTCKICSKKFRRTHHLSNHMKGHRDNNIKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01039561;
- 90% Identity
- iTF_01039561;
- 80% Identity
- -