Nbre005389.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- -
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000076.1:376834-378974[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.32 30 6.2 0.5 3 20 227 244 226 246 0.92 2 14 0.0018 0.17 13.3 1.3 1 23 285 307 285 307 0.98 3 14 0.0013 0.12 13.8 3.9 1 23 320 342 320 342 0.96 4 14 0.0034 0.32 12.4 0.7 1 23 366 388 366 388 0.98 5 14 0.0019 0.18 13.2 0.4 2 23 395 416 394 416 0.96 6 14 0.0005 0.047 15.1 3.7 3 23 423 443 422 443 0.99 7 14 0.0086 0.8 11.2 0.2 1 21 452 472 452 474 0.91 8 14 0.00049 0.045 15.1 2.9 1 23 479 501 479 501 0.97 9 14 0.14 13 7.4 2.3 1 23 506 528 506 528 0.94 10 14 4e-06 0.00038 21.7 1.3 1 23 534 556 534 556 0.98 11 14 5.6e-07 5.2e-05 24.3 1.9 1 23 562 584 562 584 0.99 12 14 0.00022 0.021 16.2 3.8 1 23 590 614 590 614 0.98 13 14 0.43 40 5.8 1.3 1 23 620 642 620 642 0.92 14 14 0.00035 0.033 15.5 9.4 1 23 648 670 648 670 0.97
Sequence Information
- Coding Sequence
- ATGGAATTAGATGTGGTTGTACGTTTACCGCAAGACGTACACAAATTGTGTCGAACGTGCATGGCTGTTACGGAAAATGATTTATCTCACGATATTTTACTCGTACAAGAACGAAGCACTACCATCGCTGGCGAAATGTTCATATCGTGTTATTCAATTCTGattttaccTGATGACGGTTTGCCGAAATCTATTTGCGACCAATGCGCTAGTAATCTAGAAATCGCGTATCGTTTTAAAACGCAATGCGAACAATCCGAGAGTAATTTAAGGGAGATATTAAACTTGCCCGAAACGCCAAACAACAAAAAAGATGTTAAAGTGAAGAATACTACTAATGTGCCTAAGAAAGTAGGAGTTACTTTATACGACTCGAATTTAgtacaaaattatattgaaGATGAAATTGACGAAAATCGATATGAGTTAGTCGATGGTGAatttagagaaattaattcaGAAAATGATAGtatACAATTTGATATAAGTAAAATAATCGGTGAAGATAATCAAATGGCAACTGAAGATAATATCGGTAACGaagatatattttcgttaatagAAGAACGAAAACAATGTAAATCAAACCAAGATGAATTATGTGGTATACCAAATAATGAACAATTTGACGATATAAAACAAGAATTGTATAGCGATGACGAAGTAATTGAaaacatttgtaaatattgcGAAATGATGTTTTCGTGTAATGAAGATTTACTAGACCATCAAGAAAACTGTAACGTCGACCAAGACCATAAATCGATtctagaaaaaatattaaaactagaAAACGGCACGTTAGAAAAAGTCGAATTATTAGACGACGAAACGAACGATAATTCCCCACCATATATGTGCACAATGTGCGGCAGtcaattcaaatcaaaatacGCACGAAACGGACACATGTCCACACATGGTCCTGTTACTGAATTCGAAAAAGTCAAATACGAGTTTCATTGTgatatttgcaaaaaaatctTCTACTCTGAATCGAAATTAACTGCTCATTTCTACAAACATGCGATTGATATCGATCAAAAGCATCGCGACGCTGCGTTCTCAATTCCACAAAATGAGCGAAACGATACGTTTACTTGTCAGATTTGTGACGAAAAATGTGACAATGGAACCGCGTTAAGAGAACATATTGATAGACATGACAACCAAGACGCCATTAGTTGTGAAGTTTGTCATGGCGAGTTTAGAGGCCAAACGAATTTAATCAACCATTTACTAAGTCATGGAATTCAGATTTCCTTATGTAAGATTTGTCATAAACGTTATGATACAATTACGAAATTAAAAGAACACATGAAAACCCATATAACTCATAACACACCCAATGTTTTTAAGTGTCCTATATGTAAAAGTGAGTTTGGAACAGTCGATGATTTAAAAACGCATTCCGTGGAACATTTAGGTGAATTTTTCGAGTGCAAAAAGTGTAAACGCAACTTTAGTAGCAAAACCGCGTTCGAAGACCATGAGAAACAACATAAAGAACCGCGATTTTTGTGTTTTCTGTGCGGCAAACAATATTTCTCAAGTGTTACGTTGCAATGTCATATTCGTGCGCATAACAATGAGAAACCATTCGTTTGTCCGCATTGTCAAAAAGGGTTTTCATCCCGCGCGACCTTATCAGTTCATAAACGAATACATTCCAAGTTAAAACCATATGTGTGCTCTTATTGTGGGTATAGTTGTCGGCAAAGTGGTGATCTAACGATGCATATACGTACGCACACTGGCGACAAACCGTATAAATGCTCATTCCCGAATTGTGATCGTAAATTTACAACTTCCAGTCAACGGAAAGAGCATTACCGGCGCCATACTAACGAACGCAATCACAAATGCATACTGTGCGCGAAAGCGTTTTTAGAATCTAAAACGCTTAAAGTGCACATGCTTACTCATACTGGCGAAAAACCGCATACTTGTAAAATATGTTCGAAAAAATTTAGACGCACTCACCACCTTTCAAACCATATGAAAGGACATAGggataataatattaaaatatag
- Protein Sequence
- MELDVVVRLPQDVHKLCRTCMAVTENDLSHDILLVQERSTTIAGEMFISCYSILILPDDGLPKSICDQCASNLEIAYRFKTQCEQSESNLREILNLPETPNNKKDVKVKNTTNVPKKVGVTLYDSNLVQNYIEDEIDENRYELVDGEFREINSENDSIQFDISKIIGEDNQMATEDNIGNEDIFSLIEERKQCKSNQDELCGIPNNEQFDDIKQELYSDDEVIENICKYCEMMFSCNEDLLDHQENCNVDQDHKSILEKILKLENGTLEKVELLDDETNDNSPPYMCTMCGSQFKSKYARNGHMSTHGPVTEFEKVKYEFHCDICKKIFYSESKLTAHFYKHAIDIDQKHRDAAFSIPQNERNDTFTCQICDEKCDNGTALREHIDRHDNQDAISCEVCHGEFRGQTNLINHLLSHGIQISLCKICHKRYDTITKLKEHMKTHITHNTPNVFKCPICKSEFGTVDDLKTHSVEHLGEFFECKKCKRNFSSKTAFEDHEKQHKEPRFLCFLCGKQYFSSVTLQCHIRAHNNEKPFVCPHCQKGFSSRATLSVHKRIHSKLKPYVCSYCGYSCRQSGDLTMHIRTHTGDKPYKCSFPNCDRKFTTSSQRKEHYRRHTNERNHKCILCAKAFLESKTLKVHMLTHTGEKPHTCKICSKKFRRTHHLSNHMKGHRDNNIKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041172;
- 90% Identity
- iTF_01041172;
- 80% Identity
- -