Basic Information

Insect: Nebria salina
Gene Symbol: salm
Assembly: GCA_944039265.1
Location: CALUEJ010000044.1:150432-156078[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.6 58 5.3 0.1 3 20 2 19 1 21 0.91

2 10 6.3e-06 0.00061 21.0 0.9 1 23 352 374 352 374 0.98

3 10 1.2e-05 0.0012 20.0 2.1 1 23 380 402 380 402 0.98

4 10 0.079 7.6 8.1 3.8 2 23 716 737 715 737 0.98

5 10 5.4e-08 5.3e-06 27.5 0.6 1 23 743 765 743 765 0.97

6 10 7.6e-05 0.0073 17.6 2.6 1 23 775 797 775 797 0.98

7 10 0.0032 0.31 12.4 2.1 2 23 1055 1076 1054 1076 0.97

8 10 0.091 8.9 7.9 1.0 1 13 1082 1094 1082 1096 0.92

9 10 1.7e-06 0.00017 22.7 4.0 3 23 1250 1270 1248 1270 0.96

10 10 2.5e-07 2.4e-05 25.4 0.9 1 23 1276 1298 1276 1298 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.6	58	5.3	0.1	3	20	2	19	1	21	0.91
2	10	6.3e-06	0.00061	21.0	0.9	1	23	352	374	352	374	0.98
3	10	1.2e-05	0.0012	20.0	2.1	1	23	380	402	380	402	0.98
4	10	0.079	7.6	8.1	3.8	2	23	716	737	715	737	0.98
5	10	5.4e-08	5.3e-06	27.5	0.6	1	23	743	765	743	765	0.97
6	10	7.6e-05	0.0073	17.6	2.6	1	23	775	797	775	797	0.98
7	10	0.0032	0.31	12.4	2.1	2	23	1055	1076	1054	1076	0.97
8	10	0.091	8.9	7.9	1.0	1	13	1082	1094	1082	1096	0.92
9	10	1.7e-06	0.00017	22.7	4.0	3	23	1250	1270	1248	1270	0.96
10	10	2.5e-07	2.4e-05	25.4	0.9	1	23	1276	1298	1276	1298	0.98

Sequence Information

Coding Sequence: ATGTGCCCACGTTGCCAAGAACAGTTTACCGATGTCACCGAATTTCTCACGCATAAAATCTCGTGCGAACAAAAAGCACAACGACATCAAGACACTGCCCACTCAGATCCTGAGGATATGGTGGTCTCTGAATATGACGACGACGAAGATGACGAAGTGCTACCATCGGGAAAACGGTTAGACGAAGCACGCCGGCATCGCCAAGATGCAGCAAATAATAACAGTGTAGACGAAGAAGAATCAGATAGAGATATAGACAGTTTACGAATTGGTTTTCCATTCCCACTGCCACCGTCCGCGAGTCATGTGACCCTGGAAGCACTTCAGAATACCAAAGTAGCCGTCGCACAATTTGCTGCAACTGCGATGGCCAATAATGCAGATAACGAAGCAGCATTACAAGAACTCGCCGTTCTTCAATCGACTTTGTTTACACTACAACACCAGCAAGTATTTCAATTGCAGTTGATCAATCAGCTTCAACAACAGTTATCTCTTAACAGATCCAAAGAAAGCAGCCCTGTATCCCCGTCACCTGAAGCCACACCTGGGCCAACAACCACCGATGCTGCTTTGCAGCCAGAGCCGTCACCTCGTGTGCCCACTCCTGTATCACAGACTGCTACTACTATCATCACCACCAACACCACTACcgcttcttcttcttcttcttctacaCCAACAACAAGTCAAGGACTATTAGGTGTTTCGTTAAATTTGCCAGAAGTACTACACCAAGCCCCAGAACCTAAAATCATTGAAGCTTCTCCAGTCATACCATCCTCCCCCACATTACAAATCGCTTGTCAACCTCATATGTGTTCCATTTCATCGTCTTTTGCATCATccattattacaaataatgacCCAATCCCATCGCTAGACGAGCCAAATACGTTAGAAATGCTTCAGAAACGAGCGCAAGAAGTACTTGATAATGCGAGCCAAGGTTTACTAGCAAACAACCTTGCGGATGAATTAGCATTTAGGAAAAATAGAGGTTCCATGTCTCCGTACGATTCAAAGTCTGGAAGAAACGAGCCGTTTTTTAAACATCGCTGTCGATATTGCGGCAAAGTTTTCGGTTCAGATTCAgcactacaaatacacatcaGATCTCATACTGGAGAACGTCCGTTCAAATGCAATGTTTGCGGTAGCCGATTTACAACTAAAGGAAATTTGAAAGTACATTTTCAAAGACACACTGCTAAATTTCcgcatataaaaatgaatccTAATCCAGTTCCTGAACATTTAGATAAATATCACCCTCCTTTACTGGCACAAATGGGACAGCAATCATCCTTGTCTCCTGGAGGACCCGTACATCATCCACCCCACCCATTTACAAGCGCACATCCATTTCCACCGACAAGTATTCCACTCTTTAGACCTTCGATACCTCCTCCAGAATTACTTCAGAACCGACTGCAACCATCTCCACACCGACCGTCACAGGATGTTAACTCACGGATAATGCCACCGCATCCATTATTTGCACGGCGAGAAGAACAAGACATGCCAGAAAATTTAAGTAAACCTGCCAGATCTCCAGCACCAGCCACAGTAGCGCCTGAATCTAGAATGAAGACTGAACCAATTGAAGAGAAACGGGAGCCCAGTGAAGAACCAAAAATATCACCAGCTGAAGATACCATTACACCAAAACAAGAAATGGACACAGACATAGAACCGGAGCTTGAACCTGACAGATATCAATCACCGCCGCCGTATGATGATTGTAGTATGGAGAGTAAGTATAGCAATGAAGACTTATTGGGAAGACAAAGTCCTATGGAGCATGGCGAAAATATGCAAGATGAACCAGAGAATTTGTCGAGTAAAGCGAACTCCATTACGGTTCCGTTAAGCATATCAACCGGACAACGATTACCTGCGTCGTTTAATTTTCCGCATGCTTCTTCCCCACCCAGTAGTACGTCATCAGGGAGCTTAGGACCCTTTTCAACTCAATCCAGTACAGACCCATCGAAAGACCCAGCTGTCTATACGAGTTTGCTCCCGAGGCCGGGCAGTAATGATAACTCATGGGAGAGTTTGATAGAGGTGACGAAAACTTCAGAAACAAGTAAACTACAGCAACTTGTAGATAATATTGAACACAAGTTGACTGATCCAAACCAGTGTGTGATATGTCATCGTGTTTTGTCCTGCAAAAGTGCACTGCAAATGCACTATCGCACACATACCGGCGAACGGccttttaaatgcaaaatttgTGGCCGAGCGTTCACTACGAAAGGCAACTTAAAAACGCACATGGGTGTACATCGTGCAAAACCACCGATGCGGGTACTTCACCAGTGTCCGGTTTGTCACAAAAAGTTCACCAATGCTCTAGTATTACAACAACATATTCGGCTGCACACCGGTGAACCAACAGATCTCACACCAGAACAAATCCAAGCAGCAGAAATTAAAGACTTTCCATCACCTGGCTCATTCCCCAATATCCCGAATTCCATGAATCCATTCCTAGGGCAAAACTTTTCAGTGCCAGGTCTATCCGGTTTACCCTTGAACAtgaaaccaggtgatatggacATGCTGAGAGGTGACAGCGAGTATCTTGACGACgacgatgatgatgatgacgaTGATATGTCTACAAGTGACCATCAATTACCATTGTTTTCCACTTCACTTGCTGCTTTGGAAAATCAAGTACGAACAATGACCACCACCGTGGCGTCGCAGTTTTCGGCTTCGAATTGTTCTGTAGAAGATTTATGCTCAGCGAGAACCATCACATCAACACCTACTCCGCAAAATGGGGATAAATCACCTACCCAATCTGGAATTATTAGTCCAAATGGATCGGAAATTCGATCTTCGCCAAATCAAATACCCGTCCagATACCTCGACCGCCTTCCAGTCAGCAACCGGATAGTCCGACACCATCTGAATCAAATTCTTTGGGTGCACTGGATTTAACACCTCGAGCAACTCATCCACCTATGCAAAGTCCAAGTCCAGGGCCACAGCCAATGTTTGCCAACTTCGGTCTGCTACCACCCAGTCAAGGTTCATCACCACTGATGACGTCAGCATTGTCTTCGCTAACGTCTTCCGTTCTGACATCAACAGCATTCAGTCCATTGGGTTTGGCAGTCGGACCAGGAGttcgtGGAAATACGACGTGCAACATATGTTTCAAAACATTCGCGTGCAATTCGGCGCTGGAAATTCATTATAGAAGTCACACAAAAGAACGACCATTCAAATGTACTGTGTGTGATCGAGGCTTCTCTACCAAAAATGGTCCGGAATGTACGTGTCGCCAAGGACAGAGGCGTATCCAGGACGGCGGGGGCCAAAAACCAAGGAGGGTGAGAAAGAAAAAACCACCCTCCTCTTCTGTCAAGATAGTCGCTACTAAGTTTCCCCCGCTGGCGATGAACCCTGGATACGCCACTGCCTTCGAATGGAGTCCCTTACTGGGCAATATGAAACAACATATGTTGACTCATAAGATTCGGGATATGCCGCAGCACATGTTTGATAAGCCAATTGGAGTGTCTCCTCATGTTCCAGTTGTCACAACCACAGCCACTGACGAACCACCACCGGTCGCCCGCGAAATTGTGCAGCCGGAACCGGAACCAGTACTTCCGCCGCCAGAGTTGCCGCTGAAATCGGATATCAGCGTCAAGCGAAGTACTTCTGAATCAGAGCTGCCTCTACCTAAACGACCACCAAACGTGCAGTCCAGTAAGCATTTGTGCCATGTATGCAATAAGAACTTCTCATCCAGCTCAGCGCTGCAGATACACATGCGCACCCATACGGGAGACAAGCCATTCCGATGTACCGTATGTCAAAAAGCATTCACCACCAAAGGCAACCTGAAGGTTCACATGGGAACTCATATGTGGAGCAACGGGGCATCACGACGCGGACGACGCATGTCACTAGATCTTCCTCCAATCCCCATGACGCCCAAGGATTCCGAATTTCTACAACGGAGACCAGACCTCTTCTACCCGTACCTCCCGGCTCCATTCCTTAACGGTATGCAGCAAAAGCTAAATGAAATCTCTGTCATTCAAAATGCGAACAACGGACTCCCGAATGCCGGCAAGTACACTGGCCTCTTAGGTTTTGGCTACCCGCCGCCAGATGCTATGCGCTCTCAGGCGGATTCTCCAGTGTCGGAGAAACAGACTGCACCATCGCCGGGTCGTGATTTAGCTGACCGAGCAGATAGGGAGCGAGAAAGGGAAGTGCTGCCGCGCGTCTGGGACATACACTACGAACGCAAATCCGTCGGCGACCAAGCCATGAACGTCTCACCGTCGACGGTGGTACCGGCGCAACCACCTCCACTGAGCCTGCAACCTCCGTCGCGAGGCGAAGGTCTCGCTGCATGA
Protein Sequence: MCPRCQEQFTDVTEFLTHKISCEQKAQRHQDTAHSDPEDMVVSEYDDDEDDEVLPSGKRLDEARRHRQDAANNNSVDEEESDRDIDSLRIGFPFPLPPSASHVTLEALQNTKVAVAQFAATAMANNADNEAALQELAVLQSTLFTLQHQQVFQLQLINQLQQQLSLNRSKESSPVSPSPEATPGPTTTDAALQPEPSPRVPTPVSQTATTIITTNTTTASSSSSSTPTTSQGLLGVSLNLPEVLHQAPEPKIIEASPVIPSSPTLQIACQPHMCSISSSFASSIITNNDPIPSLDEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKNRGSMSPYDSKSGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHIKMNPNPVPEHLDKYHPPLLAQMGQQSSLSPGGPVHHPPHPFTSAHPFPPTSIPLFRPSIPPPELLQNRLQPSPHRPSQDVNSRIMPPHPLFARREEQDMPENLSKPARSPAPATVAPESRMKTEPIEEKREPSEEPKISPAEDTITPKQEMDTDIEPELEPDRYQSPPPYDDCSMESKYSNEDLLGRQSPMEHGENMQDEPENLSSKANSITVPLSISTGQRLPASFNFPHASSPPSSTSSGSLGPFSTQSSTDPSKDPAVYTSLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEIKDFPSPGSFPNIPNSMNPFLGQNFSVPGLSGLPLNMKPGDMDMLRGDSEYLDDDDDDDDDDMSTSDHQLPLFSTSLAALENQVRTMTTTVASQFSASNCSVEDLCSARTITSTPTPQNGDKSPTQSGIISPNGSEIRSSPNQIPVQIPRPPSSQQPDSPTPSESNSLGALDLTPRATHPPMQSPSPGPQPMFANFGLLPPSQGSSPLMTSALSSLTSSVLTSTAFSPLGLAVGPGVRGNTTCNICFKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKNGPECTCRQGQRRIQDGGGQKPRRVRKKKPPSSSVKIVATKFPPLAMNPGYATAFEWSPLLGNMKQHMLTHKIRDMPQHMFDKPIGVSPHVPVVTTTATDEPPPVAREIVQPEPEPVLPPPELPLKSDISVKRSTSESELPLPKRPPNVQSSKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEISVIQNANNGLPNAGKYTGLLGFGYPPPDAMRSQADSPVSEKQTAPSPGRDLADRADREREREVLPRVWDIHYERKSVGDQAMNVSPSTVVPAQPPPLSLQPPSRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01039524; iTF_01040321; iTF_00873278;
90% Identity: iTF_00873278;
80% Identity: -