Basic Information

Insect: Nebria brevicollis
Gene Symbol: salm
Assembly: GCA_944739395.1
Location: CALYJC010000020.1:2785230-2790845[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.64 59 5.3 0.1 3 20 2 19 1 21 0.91

2 10 6.7e-06 0.00063 21.0 0.9 1 23 349 371 349 371 0.98

3 10 1.3e-05 0.0012 20.0 2.1 1 23 377 399 377 399 0.98

4 10 0.084 7.8 8.1 3.8 2 23 713 734 712 734 0.98

5 10 5.8e-08 5.4e-06 27.5 0.6 1 23 740 762 740 762 0.97

6 10 8.1e-05 0.0075 17.6 2.6 1 23 772 794 772 794 0.98

7 10 0.0034 0.32 12.4 2.1 2 23 1052 1073 1051 1073 0.97

8 10 0.097 9.1 7.9 1.0 1 13 1079 1091 1079 1093 0.92

9 10 1.9e-06 0.00017 22.7 4.0 3 23 1247 1267 1245 1267 0.96

10 10 2.7e-07 2.5e-05 25.4 0.9 1 23 1273 1295 1273 1295 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.64	59	5.3	0.1	3	20	2	19	1	21	0.91
2	10	6.7e-06	0.00063	21.0	0.9	1	23	349	371	349	371	0.98
3	10	1.3e-05	0.0012	20.0	2.1	1	23	377	399	377	399	0.98
4	10	0.084	7.8	8.1	3.8	2	23	713	734	712	734	0.98
5	10	5.8e-08	5.4e-06	27.5	0.6	1	23	740	762	740	762	0.97
6	10	8.1e-05	0.0075	17.6	2.6	1	23	772	794	772	794	0.98
7	10	0.0034	0.32	12.4	2.1	2	23	1052	1073	1051	1073	0.97
8	10	0.097	9.1	7.9	1.0	1	13	1079	1091	1079	1093	0.92
9	10	1.9e-06	0.00017	22.7	4.0	3	23	1247	1267	1245	1267	0.96
10	10	2.7e-07	2.5e-05	25.4	0.9	1	23	1273	1295	1273	1295	0.98

Sequence Information

Coding Sequence: ATGTGTCCACGTTGCCAAGAACAGTTTACAGATGTCACCGAATTTCTCACGCATAAGATCTCGTGCGAACAAAAAGCACAACGACATCAAGACACGGCCCACTCAGATCCTGAGGATATGGTGGTTTCTGAATATGACGACGACGAAGATGACGAAGTGCTACCATCGGGAAAACGGTTAGACGAAGCACGCCGGCATCGACAAGATGCAGCAAATAATAACAGTGTAGACGAAGAAGAATCAGATAGAGATATAGACAGTTTACGAATTGGTTTTCCATTCCCACTGCCACCGTCCGCGAGTCATGTGACCCTGGAAGCACTTCAGAATACCAAAGTAGCCGTCGCACAATTTGCTGCAACTGCGATGGCCAATAATGCAGATAACGAAGCAGCATTACAAGAACTCGCCGTTCTTCAATCGACTTTGTTTACACTACAACACCAGCAAGTATTTCAATTGCAGTTGATCAATCAGCTTCAACAACAGTTATCTCTTAACAGATCCAAAGAAAGCAGCCCTGTATCCCCGTCACCTGAAGCCACACCTGGGCCAACAACCACCGATGCTGCTCTGCAGCCAGAGCCGTCACCTCGTGTGCCCACTCCTGTATCACAGACTGCTACTACTATCatcaccaccaccaccaccgcttcttcttcttctacACCAACCACAAGTCAAGGACTATTAGGTGTCTCGTTAAATTTGCCAGAAGTACTACACCAAGCCCCAGAACCTAAAATCATTGAAGCTCCTCCAGTCATGCCATCCTCCCCCACATTACAAATCGCTTGTCAACCTCATATGTGTTCCATTTCATCGTCTTTTGCATCATccattattacaaataatgacCCAATCCCATCGCTAGACGAGCCAAATACGTTAGAAATGCTTCAGAAACGAGCGCAAGAAGTACTTGATAATGCGAGCCAAGGTTTACTAGCAAACAACCTTGCGGATGAATTAGCATTTAGGAAAAACAGAGGTTCCATGTCTCCGTACGATTCAAAGTCTGGAAGGAACGAGCCGTTTTTTAAACATCGCTGTCGATATTGCGGCAAAGTTTTCGGTTCAGATTCagcactacaaatacacatcaGATCTCATACTGGAGAACGTCCGTTCAAATGCAATGTTTGCGGTAGCCGATTTACAACTAAAGGAAATTTGAAAGTACATTTTCAAAGACACACTGCTAAATTTCCgcatataaaaatgaatccTAATCCAGTTCCTGAACATTTAGATAAATATCACCCTCCTTTACTGGCACAAATGGGACAGCAATCATCCTTGTCTCCTGGAGGACCCGTACATCATCCACCCCACCCATTTACAAGCGCACATCCATTTCCACCGACAAGTATTCCACTCTTTAGACCTTCGATACCTCCTCCAGAATTACTTCAGAACCGACTGCAACCATCTCCACACCGACCGTCACAGGATGTTAACTCACGGATAATGCCACCGCATCCATTATTTGCACGGCGAGAAGAACAAGACATGCCAGAAAATTTAAGTAAACCTGCCAGATCTCCAGCACCAGCCACAGTAGCGCCTGAATCTAGAATGAAGACTGAACCAATTGAAGAGAAACGGGAGCCCAGTGAAGAACCAAAAATATCACCAGCTGAAGATACGATTACACCAAAACAAGAAATGGACACAGACATAGAACCTGAGCTTGAACCTGACAGATATCAATCACCGCCGCCGTATGATGATTGTAGTATGGAGAGTAAGTATAGCAATGAAGACTTGTTGGGAAGACAAAGTCCTATGGAGCATGGCGAAAATATGCAAGACGAACCAGAGAATTTGTCGAGTAAAGCGAACTCTATTACGGTTCCGTTAAGCATATCAACCGGACAACGATTACCTGCGTCGTTTAATTTTCCGCATGCTTCTTCCCCACCCAGTAGTACGTCATCAGGGAGCTTAGGACCCTTTTCAACTCAATCCAGTACAGACCCATCGAAAGACCCAGCTGTATATACGAGTTTGCTCCCGAGGCCGGGCAGTAATGATAACTCATGGGAGAGTTTGATAGAAGTGACGAAAACTTCAGAAACAAGTAAACTACAGCAACTTGTAGATAATATTGAACACAAGTTGACTGATCCAAACCAGTGTGTGATATGTCATCGTGTTTTGTCCTGCAAAAGTGCACTGCAAATGCACTATCGCACACATACCGGCGAACGGCcttttaaatgcaaaatatgTGGCCGAGCGTTCACTACGAAAGGCAACTTAAAAACGCACATGGGTGTACATCGTGCAAAACCACCGATGCGGGTACTTCACCAGTGTCCCGTTTGTCACAAAAAGTTCACCAATGCTCTAGTATTACAACAACATATTCGGCTGCACACCGGTGAACCAACAGATCTCACACCAGAACAAATCCAAGCAGCAGAAATTAAAGACTTTCCATCACCTGGCTCATTCCCCAATATCCCGAATTCCATGAATCCATTCCTAGGGCAAAACTTTTCAGTGCCAGGTCTTTCCGGTTTACCCTTGAACATgaaaccaggtgatatggaCATGCTGAGAGGTGACAGCGAGTATCTTGACGACgacgatgatgatgatgacgaTGATATGTCTACAAGTGACCATCAATTACCATTGTTTTCCACTTCACTTGCTGCTTTGGAAAATCAAGTACGAACAATGACCACCACCGTGGCGTCGCAGTTTTCGGCTTCGAATTGTTCTGTAGAAGATTTATGCTCAGCGCGAACTATCACATCAACACCTACTCCGCAAAATGGGGACAAATCACCTACCCAATCTGGAATTATTAGTCCAAATGGATCGGAAATTCGATCTTCGCCAAATCAAATACCCGTCCagATACCTCGACCGCCTTCCAGTCAGCAACCGGATAGTCCAACACCATCTGAATCAAATTCTTTGGGTGCACTGGATTTAACACCTCGAGCAACTCATCCACCTATGCAAAGTCCAAGTCCAGGGCCACAGCCAATGTTTGCCAACTTCGGCCTTCTACCACCCAGTCAAGGTTCATCGCCACTGATGACGTCAGCATTGTCTTCGCTAACGTCTTCCGTTCTGACATCAACAGCATTCAGTCCATTGGGTTTGGCAGTCGGACCAGGAGttcgtGGAAATACGACGTGCAACATATGTTTCAAAACATTCGCGTGCAATTCGGCGCTGGAAATTCATTATAGAAGTCACACAAAAGAACGACCATTCAAATGTACTGTGTGTGATCGAGGCTTCTCAACCAAAAATGGTCCGGAATGTACGTGTCGCCAAGGACAGAGGCGTATCCAGGACGGCGGGGGCCAAAAACCAAGGAGGGTGAGAAAGAAAAAACCACCCTCCTCTTCTGTCAAGATAGTCGCTACTAAGTTTCCCCCGCTGGCGATGAACCCTGGATACGCCACTGCCTTCGAATGGAGTCCCTTACTGGGAAATATGAAACAACATATGTTGACTCATAAGATTCGGGATATGCCGCAGCACATGTTTGATAAGCCAATTGGAGTGTCTCCTCATGTTCCAGTTGTCACAACCACAGCCACTGACGAACCACCACCGGTCGCCCGCGAAATTGTGCAGCCGGAACCGGAACCAGTACTTCCGCCGCCAGAGTTGCCGCTGAAATCGGATATCAGCGTCAAGCGAAGTACTTCTGAATCAGAGCTGCCTCTACCTAAACGACCACCAAACGTGCAGTCCAGTAAGCATTTGTGCCATGTATGCAATAAGAACTTCTCATCCAGCTCAGCGCTGCAGATACACATGCGCACCCATACGGGAGACAAGCCATTCCGATGTACCGTATGTCAAAAAGCATTCACCACCAAAGGCAACCTGAAGGTACACATGGGAACTCATATGTGGAGCAACGGGGCATCCAGACGCGGACGACGCATGTCACTAGATCTTCCTCCAATCCCCATGACGCCCAAGGATTCCGAATTTCTACAACGGAGACCAGACCTCTTCTACCCGTACCTCCCGGCTCCATTCCTTAACGGTATGCAGCAAAAGCTAAATGAAATCTCTGTCATTCAAAATGCGAACAACGGACTCCCGAATGCCGGCAAGTACACTGGCCTCTTAGGTTTTGGCTACCCGCCGCCAGATGCTATGCGCTCCCAGGCGGATTCTCCAGTGTCGGAGAAACAGACTGCACCGTCGCCGGGTCGTGATTTAGCTGACCGAGCAGATAGGGAGCGAGAAAGGGAGGTGCTGCCGCGCGTCTGGGACATACACTACGAACGCAAATCCGTCGGCGACCAAGCCATGAACGTCTCACCGTCGACGGTGGTACCGGCGCAACCACCTCCACTGAGCCTGCAACCTCCGTCGCGAGGCGAAGGTCTCGCTGCATGA
Protein Sequence: MCPRCQEQFTDVTEFLTHKISCEQKAQRHQDTAHSDPEDMVVSEYDDDEDDEVLPSGKRLDEARRHRQDAANNNSVDEEESDRDIDSLRIGFPFPLPPSASHVTLEALQNTKVAVAQFAATAMANNADNEAALQELAVLQSTLFTLQHQQVFQLQLINQLQQQLSLNRSKESSPVSPSPEATPGPTTTDAALQPEPSPRVPTPVSQTATTIITTTTTASSSSTPTTSQGLLGVSLNLPEVLHQAPEPKIIEAPPVMPSSPTLQIACQPHMCSISSSFASSIITNNDPIPSLDEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKNRGSMSPYDSKSGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHIKMNPNPVPEHLDKYHPPLLAQMGQQSSLSPGGPVHHPPHPFTSAHPFPPTSIPLFRPSIPPPELLQNRLQPSPHRPSQDVNSRIMPPHPLFARREEQDMPENLSKPARSPAPATVAPESRMKTEPIEEKREPSEEPKISPAEDTITPKQEMDTDIEPELEPDRYQSPPPYDDCSMESKYSNEDLLGRQSPMEHGENMQDEPENLSSKANSITVPLSISTGQRLPASFNFPHASSPPSSTSSGSLGPFSTQSSTDPSKDPAVYTSLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEIKDFPSPGSFPNIPNSMNPFLGQNFSVPGLSGLPLNMKPGDMDMLRGDSEYLDDDDDDDDDDMSTSDHQLPLFSTSLAALENQVRTMTTTVASQFSASNCSVEDLCSARTITSTPTPQNGDKSPTQSGIISPNGSEIRSSPNQIPVQIPRPPSSQQPDSPTPSESNSLGALDLTPRATHPPMQSPSPGPQPMFANFGLLPPSQGSSPLMTSALSSLTSSVLTSTAFSPLGLAVGPGVRGNTTCNICFKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKNGPECTCRQGQRRIQDGGGQKPRRVRKKKPPSSSVKIVATKFPPLAMNPGYATAFEWSPLLGNMKQHMLTHKIRDMPQHMFDKPIGVSPHVPVVTTTATDEPPPVAREIVQPEPEPVLPPPELPLKSDISVKRSTSESELPLPKRPPNVQSSKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEISVIQNANNGLPNAGKYTGLLGFGYPPPDAMRSQADSPVSEKQTAPSPGRDLADRADREREREVLPRVWDIHYERKSVGDQAMNVSPSTVVPAQPPPLSLQPPSRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01041145;
90% Identity: iTF_00873278;
80% Identity: -