Basic Information

Insect: Nebria salina
Gene Symbol: -
Assembly: GCA_944039265.1
Location: CALUEJ010000139.1:913544-916046[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.1e-05 0.0011 20.2 0.5 1 23 89 111 89 111 0.98

2 15 6.3 6.1e+02 2.1 0.7 2 16 117 131 116 137 0.81

3 15 0.0065 0.63 11.5 6.0 1 23 150 172 150 172 0.95

4 15 0.0013 0.13 13.6 0.4 3 23 177 198 176 198 0.96

5 15 0.00088 0.085 14.2 5.9 1 23 208 230 208 230 0.98

6 15 0.6 58 5.3 0.2 2 19 236 253 235 257 0.77

7 15 0.0019 0.19 13.1 1.9 2 23 264 285 263 285 0.97

8 15 0.11 11 7.6 0.6 1 23 288 311 288 311 0.94

9 15 8.7e-06 0.00085 20.5 2.0 2 23 321 342 320 342 0.97

10 15 0.007 0.68 11.4 4.7 2 19 349 366 348 372 0.93

11 15 0.00019 0.018 16.3 0.2 2 23 383 405 382 405 0.96

12 15 4.9e-05 0.0048 18.2 3.1 1 23 412 434 412 434 0.97

13 15 0.00044 0.043 15.1 0.2 3 23 443 464 441 464 0.94

14 15 2e-07 1.9e-05 25.7 1.4 1 23 470 492 470 492 0.97

15 15 0.00017 0.017 16.4 3.1 1 23 498 521 498 521 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.1e-05	0.0011	20.2	0.5	1	23	89	111	89	111	0.98
2	15	6.3	6.1e+02	2.1	0.7	2	16	117	131	116	137	0.81
3	15	0.0065	0.63	11.5	6.0	1	23	150	172	150	172	0.95
4	15	0.0013	0.13	13.6	0.4	3	23	177	198	176	198	0.96
5	15	0.00088	0.085	14.2	5.9	1	23	208	230	208	230	0.98
6	15	0.6	58	5.3	0.2	2	19	236	253	235	257	0.77
7	15	0.0019	0.19	13.1	1.9	2	23	264	285	263	285	0.97
8	15	0.11	11	7.6	0.6	1	23	288	311	288	311	0.94
9	15	8.7e-06	0.00085	20.5	2.0	2	23	321	342	320	342	0.97
10	15	0.007	0.68	11.4	4.7	2	19	349	366	348	372	0.93
11	15	0.00019	0.018	16.3	0.2	2	23	383	405	382	405	0.96
12	15	4.9e-05	0.0048	18.2	3.1	1	23	412	434	412	434	0.97
13	15	0.00044	0.043	15.1	0.2	3	23	443	464	441	464	0.94
14	15	2e-07	1.9e-05	25.7	1.4	1	23	470	492	470	492	0.97
15	15	0.00017	0.017	16.4	3.1	1	23	498	521	498	521	0.95

Sequence Information

Coding Sequence: ATGACATCAGAAGATAAGAAACCATTATCAACAGTCAAAGATCAAGTAGCGCAAATGTTTAATTCGATCCACAAGTTAGAAACGAAAGATAAAACTGAGGCTTTTTCTTTCGTAAGAACATATCTAGATGATAGTAAATTAGCGAAAAATGGAGTTTCTAGAAGAAGCCGAAAAAATACTATTGAAACTAATACAGAAaatgttaaaagtaataatcgaaaattgatgtttaaaACTCGGATTCAACGAGTGAAAAAAGCGGTTTTTAAGTGTCGATCTTGCGGCGCACCGTTTAATACGAAATCTTTATTAATCAAACATTTAGAAACTCATATAGGTACGCCAATATCTTGCAGATTGTGTCGAACTAGTTTTAATAGTAACATTTCATATCTATGTCATATTTCGTTGAAAATGTGtaagaaaactaaaaaaagCTGGAAAACTTACTGTTGCGATCAATGCAATAAGATTTTTAGATATAAACGACATTTTGACCGACATGTGGAAGGCCACAAAAGGAATAATTGTACTTACTGTGATGCACGATTAACGCGGCGAAAACAATTGGTCAATCATTTAATGATTGCGCATTCAATTAAATTGGAACGGACTGTTATGTTTAAATGTGAATATTGTGAAAAAAGatatgtAAAAAAGCGTTCTTTATATCACCATTTAAAGCAACATGCCGATGATAAAATAGTGTGTAACGAATGTGGTAAAATGAGCGCAACTCTCGACGAACACAACATTCATTTCGGTCAACACGACAAAGATCGACCGTGGAAATGCGACAAATGCAATGATCGATTCTCGAGACgacaacaatatttaatacatattaaaagACATGATCGATACAAATGCATATCGTGCGATGAAACATTCGCGTCTAAGGCTCGCGTGCTACGACATAAACAACGCGGACATTTAGTTCACGGTTTAGAACCCCAATTAAAGTGTCCACACTGTCCCAGAGCATTCCAACGGCGGCTAACATTACAAATCCACATGAGAAAACATTCAGATGACAAACTCATGTATTGTAAATACTGCAATAAACACTTCCGCACaccttatttatatttcaaacattgCGCAACAACCGTCCACGATGTAAACTCGCCCGTAAAACAACAATTAGTTTGTGAAATATGCGGTAAACTATTCgtaaaaaaatacttactcGACCAGCACTTACAACGCGTTCACAATCtatcaaaacaaacatttactTGCGAGTATTGCGGCCACAGGACCACAAATCGCACCAACTTAGAGCGGCACCTAACGCTCCATATGGAAGATAAAAAACAGACGATCTGCGATAAGTGCGGCAAAGCGTTCTACAATATGATCACACTTAAAGATCATATATCGTACGTTCATATGCAAGAGCGTGATTTTAAGTGTGACGAATGCGATAAAGCATTCAAACGTAATTCGGAGTTGATTCGCCACAAAACGAGCCATTCGGAATTACGTCCACATGTGTGTGCCACATGTGGTGTATCATATAAACGTAGTACTCATTTACGCCGCCATGAAGAAACCCAACATGGGACACAAGCGAAAAACCGACGCGTCCAGCGATTGACCAAAGATGAGAACGGACAATTAATACCTGTGCCCCAACCGAAAAAATCGAGATGTAAGAAAGTTGTCGAAACGCCAACTAACCCGAAACAAGTTATTTCGTTTCTTGATCCCCAATCCAGGGAAATGGTATCGTTTACGCTGCCTAATGAAATTCAAGATGGTGCGTTGACTACAATAGTAAGCCTTAATAATCAAGATGTGCAAGCTTTGCCGTATCAACAAACTAACCTAGTTTTGAATTCAAATGACAGTATTATTCTTGCGAATGATTTTAGTGCGCAATCGCTGAATTTAGTTGGTACTTTTGATCAGAATTTCACTGGGTTCACTTCACATGAACCGGTTCGGGCTGGTAAACCGTTTGTACCCGAAACTATACGTATTGAAAATTCGACTACTTGCGATATTTTATTACCGGaaaatcgaattttaaatCTACAAACGCAATAA
Protein Sequence: MTSEDKKPLSTVKDQVAQMFNSIHKLETKDKTEAFSFVRTYLDDSKLAKNGVSRRSRKNTIETNTENVKSNNRKLMFKTRIQRVKKAVFKCRSCGAPFNTKSLLIKHLETHIGTPISCRLCRTSFNSNISYLCHISLKMCKKTKKSWKTYCCDQCNKIFRYKRHFDRHVEGHKRNNCTYCDARLTRRKQLVNHLMIAHSIKLERTVMFKCEYCEKRYVKKRSLYHHLKQHADDKIVCNECGKMSATLDEHNIHFGQHDKDRPWKCDKCNDRFSRRQQYLIHIKRHDRYKCISCDETFASKARVLRHKQRGHLVHGLEPQLKCPHCPRAFQRRLTLQIHMRKHSDDKLMYCKYCNKHFRTPYLYFKHCATTVHDVNSPVKQQLVCEICGKLFVKKYLLDQHLQRVHNLSKQTFTCEYCGHRTTNRTNLERHLTLHMEDKKQTICDKCGKAFYNMITLKDHISYVHMQERDFKCDECDKAFKRNSELIRHKTSHSELRPHVCATCGVSYKRSTHLRRHEETQHGTQAKNRRVQRLTKDENGQLIPVPQPKKSRCKKVVETPTNPKQVISFLDPQSREMVSFTLPNEIQDGALTTIVSLNNQDVQALPYQQTNLVLNSNDSIILANDFSAQSLNLVGTFDQNFTGFTSHEPVRAGKPFVPETIRIENSTTCDILLPENRILNLQTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01039523; iTF_01040314;
90% Identity: iTF_01039523; iTF_01040314;
80% Identity: -