Basic Information

Insect: Nebria salina
Gene Symbol: -
Assembly: GCA_944039265.1
Location: CALUEJ010000141.1:778277-782174[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0028 0.27 12.6 0.4 1 23 338 360 338 360 0.93

2 12 0.00075 0.073 14.4 0.1 2 23 363 385 363 385 0.94

3 12 1.9e-06 0.00019 22.6 1.4 2 23 454 475 453 475 0.97

4 12 2.7e-05 0.0026 19.0 0.4 1 23 481 503 481 503 0.97

5 12 0.00024 0.024 16.0 1.0 1 23 509 531 509 531 0.97

6 12 1.7e-06 0.00016 22.8 1.5 1 23 537 559 537 559 0.98

7 12 0.00018 0.017 16.4 2.0 1 23 565 587 565 587 0.98

8 12 8e-06 0.00077 20.6 0.3 1 23 595 617 595 617 0.98

9 12 0.0027 0.26 12.7 0.2 1 23 623 645 623 645 0.96

10 12 2.7e-05 0.0027 19.0 1.4 1 23 651 673 651 673 0.98

11 12 0.00015 0.014 16.7 0.3 1 23 679 701 679 701 0.98

12 12 3.3e-05 0.0032 18.7 2.8 1 23 707 729 707 729 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0028	0.27	12.6	0.4	1	23	338	360	338	360	0.93
2	12	0.00075	0.073	14.4	0.1	2	23	363	385	363	385	0.94
3	12	1.9e-06	0.00019	22.6	1.4	2	23	454	475	453	475	0.97
4	12	2.7e-05	0.0026	19.0	0.4	1	23	481	503	481	503	0.97
5	12	0.00024	0.024	16.0	1.0	1	23	509	531	509	531	0.97
6	12	1.7e-06	0.00016	22.8	1.5	1	23	537	559	537	559	0.98
7	12	0.00018	0.017	16.4	2.0	1	23	565	587	565	587	0.98
8	12	8e-06	0.00077	20.6	0.3	1	23	595	617	595	617	0.98
9	12	0.0027	0.26	12.7	0.2	1	23	623	645	623	645	0.96
10	12	2.7e-05	0.0027	19.0	1.4	1	23	651	673	651	673	0.98
11	12	0.00015	0.014	16.7	0.3	1	23	679	701	679	701	0.98
12	12	3.3e-05	0.0032	18.7	2.8	1	23	707	729	707	729	0.98

Sequence Information

Coding Sequence: ATGGCTGAAATTTTAACTGATGATAATTATAATGATTTGTGTAGACTTTGTGCATCCAAAACAAACGTTTTAATCggattaaatatattcgaGAGCGAAGGAAATGTTAgggaaattaataaaaaaattgcgaCACTATTACCCGTACagGTACACGAAACAGATCGTTTGCCGAAAATGATCTGTAACGAATGCGTTTACAaacttgatttattttttacgtttCGAGAGAAATCAATTGAAACTGAATGCATATTAATCGAACTAGTGAAAAAACTACCTCATCACATACACCATCACACGAACATTGAGAAAGCAACATCACCAAGCCTGCACTTGGGCGCCGGCATGGACGCGCAACCAATGAACATTGCTCCGAACGCTGATGGTCTACTAGGCCACCCAAATATCTCTCTCGTCCACGATATGGCGATCCGCGAGAATCTACTGGCGAGTGACGAAATGATACTCAACAGCCATGCGAACATCTCAATGCACAATCACGATTTGGAGAACATTGAAATCGCACCCAATGAATTGAATACTCATGAAAATTTACACAATCATTTAGACTTGCATCACGAGTCTGAGATGGCGCATTTGGTGCAACAGAACATGCAAATATCCGATACTCAACTCAGCGTCGAGAATTTAGATATGATTCCGCAGCATAATCTCATACCGAATTACGATTCGATGCAAGATAAACATTTAGAAGATGAAACGAATTTGGACACTAGGGAAATATTGACCCTCAAAGACCAAGAGGGCGTGATGACTGTTAAAATTGAACACATTAAAACGGAGAGTCAAGGTGAAATGGAAACAAATAAAGCAGCTTATAGTGATGCATCTGATACAGATGATTCTAGTGATACTGAGTTTGACTCGAATTTAGATACATCCGCTGGAGAAAATATGAGGAATGAGGTTATGATTTCTGGTTTGTACAACGAGAAACATAGCGATGAAAGCGTTAGCATATCTGAATCAACTGACGGAAAACCTGAATTTTCTTGCACTCTTTGCGGAAAAATATCAACAGACAAAGATGAATATTTGAGCCACTACGGTGAACACTTAAATGAATGCCTTATTTGCCATGAGGCATTCGCGAATTTAGAAGCTTTAAAAGTTCATCAAAACGAAATACACTCGCATCGGCCTCAAATTAGAAAATCTCATAATTCTATTAAGTCCCGTGCTCGCCTCAAAGACGAATCCAGTGAAAATATCGATGATAGTTTCTTCAAAGACGAAAGTTCCGATGAAGAAAAATCGAATGAATTCATGCCCGGCGAGGACGAGGATGAAGAAGATACTGGTGATAACGAGAAGAGGAGAAAATGGCAACCGAAAGTGTGTAAAGAATGTggtaaaaattacaaaacgaaTTATAAGCTAGCTGAACATATGCGCAAACATACCGGGGAACAACCTTTTAAGTGTACTATGTGTGATAAAGCTTTTCGCAGCAAGATTGGACTAGCTCAGCACGAAGCAAAACACACAGGACAGTTTAATTTTGCGTGTCCAACGTGTGGTAAAGGATTCCAATGTCGCAGTTATCTAATTGTTCACCAACGCGTACACAGCGATTTGAAACCGTATCCTTGTACGACGTGTGGCCGTAACTTTAAAACGAAACAGTCACTTTTGGATCATATGAACCGGCATTTAGGTGTCAAGCCATTTATGTGCGAAATATGCGGCCGatcatttattacaaaaggTTTGTGTAAATCACACCAAAAAGTCCACAGTGGCACCGATAATCGCCAATATCCGTGTACTGtatgcaataaattatttgttagtaAAAGTTATTTAGCTACGCATGTGCGTATCCATACAGGCGAGAAGCCGTTTATGTGTGAaGTTTGTGGTAAAGGTTTCTTGACGCGTGTTGACTTACGGATTCACTCTACCATGCATACTGGTGAAAAATCGTTTGTTTGTGAAATGTGCGGTAAGGCATTTGCTAGAAGGGATGCGTTAAGATGTCACAGGCGATCACACACTGGAGAACGACCATACAGCTGTGACATCTGTGGTCAAACGTTTACCCAATTCTCACCAATGGCAATCCACAAACGACTTCACACCGGTGAACGTCCCTATTCATGTGAAGTGTGCAAAAAAACATTTGTGTCCCGGTCCACAATGATGTCACACCGGAAAAAGCACACaccataa
Protein Sequence: MAEILTDDNYNDLCRLCASKTNVLIGLNIFESEGNVREINKKIATLLPVQVHETDRLPKMICNECVYKLDLFFTFREKSIETECILIELVKKLPHHIHHHTNIEKATSPSLHLGAGMDAQPMNIAPNADGLLGHPNISLVHDMAIRENLLASDEMILNSHANISMHNHDLENIEIAPNELNTHENLHNHLDLHHESEMAHLVQQNMQISDTQLSVENLDMIPQHNLIPNYDSMQDKHLEDETNLDTREILTLKDQEGVMTVKIEHIKTESQGEMETNKAAYSDASDTDDSSDTEFDSNLDTSAGENMRNEVMISGLYNEKHSDESVSISESTDGKPEFSCTLCGKISTDKDEYLSHYGEHLNECLICHEAFANLEALKVHQNEIHSHRPQIRKSHNSIKSRARLKDESSENIDDSFFKDESSDEEKSNEFMPGEDEDEEDTGDNEKRRKWQPKVCKECGKNYKTNYKLAEHMRKHTGEQPFKCTMCDKAFRSKIGLAQHEAKHTGQFNFACPTCGKGFQCRSYLIVHQRVHSDLKPYPCTTCGRNFKTKQSLLDHMNRHLGVKPFMCEICGRSFITKGLCKSHQKVHSGTDNRQYPCTVCNKLFVSKSYLATHVRIHTGEKPFMCEVCGKGFLTRVDLRIHSTMHTGEKSFVCEMCGKAFARRDALRCHRRSHTGERPYSCDICGQTFTQFSPMAIHKRLHTGERPYSCEVCKKTFVSRSTMMSHRKKHTP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01039510; iTF_00873279; iTF_01040319;
90% Identity: iTF_01039510;
80% Identity: -