Lspi002315.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- -
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000038.1:367118-373274[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.098 8.2 7.5 0.9 1 20 324 343 324 346 0.82 2 12 0.0021 0.18 12.7 0.1 2 23 349 371 349 371 0.94 3 12 4.3e-06 0.00036 21.2 3.2 2 23 441 462 440 462 0.97 4 12 0.00039 0.033 15.1 0.3 1 23 468 490 468 490 0.97 5 12 0.0002 0.017 16.0 1.0 1 23 496 518 496 518 0.97 6 12 1.4e-06 0.00011 22.8 1.5 1 23 524 546 524 546 0.98 7 12 0.00014 0.012 16.4 2.0 1 23 552 574 552 574 0.98 8 12 1e-05 0.00084 20.1 0.3 1 23 582 604 582 604 0.98 9 12 0.0022 0.18 12.7 0.2 1 23 610 632 610 632 0.96 10 12 2.2e-05 0.0019 19.0 1.4 1 23 638 660 638 660 0.98 11 12 0.00012 0.0099 16.7 0.3 1 23 666 688 666 688 0.98 12 12 3.1e-05 0.0026 18.5 1.8 1 23 694 716 694 716 0.98
Sequence Information
- Coding Sequence
- ATGGCTGGTAATCTGACTGATGATAATTATAGTGAATTGTGTAGACTTTGTGCAGCCAAAACAACAATTTTACTCCGTCTAAATATATTCGAAGACGAAGGAAATGTTAGAGAAATTCATAAAAAAATTGCTACACTATTAACAGTACAGGTCCATGAAGCAGATCGTTTACCAAAAATGATTTGCAGCGATTGCATATACAAACTGGACTTATTTCTAACATTTCGTGAAAAATCGATTGAAACCGAATGCTTCCTAATCGAACTAATCAATAAAATGCCTATGCACCATCATACCATCGAAAAACCAAAATCACCACCAGTGCACATAATGGAAGACCATCAAATGAACACAGACGGTCTGTTAGGCCACCCAAATATTTCGCTCGTGCACGATATGGCAATACGCGAAAATTTGGTCAGTGAAGAAATGATACTCGGTGTTCATGAGAATATCGCAATGCATAATCATGAGTTAGAGAATATTGATATCGCTCCAAATGAATTGAATACGCATGAGAATTTGCACAATCACCACCATTTAGACTTACACCATGAATCCGAGATGGCGCAATTAGTTCAACAGAATATGCAGATTTCGGATACTCAACTCAGCGTGGAGAATTTACACATGCTTCCGCCGCATAATCTTGTTTCCAATTATGAGGCGATGCAGGAGAAGCATTTGGAAGAGCAGGATTTAGTTGATAGGCCGATGTTGACTCTCAAGGATCAACGGGGCTTGATGGAAGTTCATATTGAGCTAATTAAAACTGAGAGCCAAGGAGAAACGGAAATCAAATATAGTGATCCATCTGATTCAGATGATTCTAGCGATACAGAATTCGAGTCTACCCTAAATACTACTACCGGAGAAAATATGAAAAATGAAATTATAAACTCCAATCTGTACGATGAACAGAAACATAACAATGTAAATATGGGCGCATCAACCGATGAAAAACAACAATTTTCATGCAATCTTTGTGGTAAAATGACAACAGACCGGGAAGAACATTTGACCCACTACGGTGAACATTTGAACGAATGTCTCATTTGTAATGAGGCATTCGCAAACTTAGAGGCTTTAAATACGCACAAAAAAGAAATACACTCACGCCGGCCTCAGAACCGAAAGTCTCATAAGTCTATAAAATCTCGCGCTCGCCTTAAAGAAGACTCCATCGTTAATATCGAGGATAATTTCTTTAAAGAAGAAAGCTCAGACGATGAAAAATCTAACGAATTTATGCCCGATGAGGATGAAGAAGACGAGGAGGCGGTTGACAAAAATGGGAAACGAAGAAAATGGCAGCCGAAAGTGTGTAAGGAATGTGGGAAACATTATAAAACGAATTATAAATTGGCGGAACATATGCGGAAACACACCGGTGAACAGCCCTTTAAGTGCAGCATGTGTGTTAAAGCTTTTCGAAGCAAAATCGGACTCGCGCAACATGAAGCCAAGCATACAGGCCAATTCGATTTCGCGTGTCCAACGTGTGGAAAAGGATTTCAATGCCGAAGTTATTTAATTGTTCATCAAAGGGTACACAGTGATTTAAAGCCATATCCGTGTACCACATGTGGCCGAAATTTCAAAACGAAACAGTCACTTTTAGATCACATGAATCGCCATTTAGGCGTTAAACCGTTTATGTGCGAAATATGTGGCCGATCTTTTATTACAAAGGgattgtgcaaatcacaccaaaaagtccatagtggcacggataaccgtcagtttccatgctctgtgtgcaataaactatttgttagtaaaagttatctagctactcatgttcgtattcatacaggcgagaagccgttcatgtgcgaggtttgcggtaaaggtttcctgacacgcgtcgacctacgaattcactctacaatgcacacgggcgaaaagtcgttcgtttgcgaaatgtgcggtaaggcatttgcaagaagagatgcgttgcggtgccacaggagatcgcataccggggaacggccctacagctgtgacatctgtgggcaaacttttacccaattctcgccaatggcaatccataaacgacttcataccggtgaacgtccctactcatgtgaagtgtgtaaaaaagcatttgtgtcccgatcaacgatgatgtcacaccggaaaaagcatacaccataA
- Protein Sequence
- MAGNLTDDNYSELCRLCAAKTTILLRLNIFEDEGNVREIHKKIATLLTVQVHEADRLPKMICSDCIYKLDLFLTFREKSIETECFLIELINKMPMHHHTIEKPKSPPVHIMEDHQMNTDGLLGHPNISLVHDMAIRENLVSEEMILGVHENIAMHNHELENIDIAPNELNTHENLHNHHHLDLHHESEMAQLVQQNMQISDTQLSVENLHMLPPHNLVSNYEAMQEKHLEEQDLVDRPMLTLKDQRGLMEVHIELIKTESQGETEIKYSDPSDSDDSSDTEFESTLNTTTGENMKNEIINSNLYDEQKHNNVNMGASTDEKQQFSCNLCGKMTTDREEHLTHYGEHLNECLICNEAFANLEALNTHKKEIHSRRPQNRKSHKSIKSRARLKEDSIVNIEDNFFKEESSDDEKSNEFMPDEDEEDEEAVDKNGKRRKWQPKVCKECGKHYKTNYKLAEHMRKHTGEQPFKCSMCVKAFRSKIGLAQHEAKHTGQFDFACPTCGKGFQCRSYLIVHQRVHSDLKPYPCTTCGRNFKTKQSLLDHMNRHLGVKPFMCEICGRSFITKGLCKSHQKVHSGTDNRQFPCSVCNKLFVSKSYLATHVRIHTGEKPFMCEVCGKGFLTRVDLRIHSTMHTGEKSFVCEMCGKAFARRDALRCHRRSHTGERPYSCDICGQTFTQFSPMAIHKRLHTGERPYSCEVCKKAFVSRSTMMSHRKKHTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041133;
- 90% Identity
- -
- 80% Identity
- -