Nsal008534.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nebria salina
Gene Symbol
-
Assembly
GCA_944039265.1
Location
CALUEJ010000060.1:275357-278102[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 9.7e-06 0.00094 20.4 4.7 1 23 314 336 314 336 0.98
2 15 0.0013 0.13 13.6 1.0 2 23 342 364 341 364 0.96
3 15 0.00021 0.02 16.2 0.1 1 23 397 419 397 419 0.98
4 15 0.00056 0.055 14.8 3.8 1 23 423 445 423 445 0.99
5 15 9.2e-08 8.9e-06 26.7 3.1 1 23 451 473 451 473 0.99
6 15 2.3 2.3e+02 3.4 1.1 1 23 563 587 563 587 0.88
7 15 0.00038 0.037 15.3 0.9 1 23 599 621 599 621 0.99
8 15 0.095 9.2 7.8 7.1 1 23 638 660 638 660 0.97
9 15 2.6e-06 0.00025 22.2 1.2 1 23 701 723 701 723 0.96
10 15 0.01 0.98 10.9 0.4 1 23 730 752 730 752 0.98
11 15 8.9e-07 8.7e-05 23.6 0.2 2 23 761 782 760 782 0.96
12 15 0.006 0.59 11.6 1.2 2 21 787 806 786 807 0.93
13 15 0.023 2.3 9.7 0.5 2 23 813 835 812 835 0.94
14 15 0.00057 0.055 14.8 0.4 1 23 841 863 841 863 0.98
15 15 3.1e-05 0.003 18.8 0.4 1 23 871 893 871 893 0.97

Sequence Information

Coding Sequence
ATGTTCTGTTTCGCGAAAATCTGTCGCATTTGTCTAAATGCGTCAGACTCCAAGTTGATCAAGTTAAATAATCTCGATTACGACAAGATACGAATACGGGAGAAGTTGAAATTTTGCATACCCGAAGCTATTAACGAAAAACACTTGCCCGAGTTGATTTGTATCAATTGCTGTAAAAATTTGCGCCGTTCGTATTCGTTCAAACAAATGTGTTTACAAAACAAGGATAAGTTGAAAAAATACGCTTCAACACTACTAGTTTCTAAGCGACACAAATATGGTAACCTAAGTATTGGTTTGGTTGATTTTATTGAGAAAAATCAAGTAGCATTGAACACGTCAAATGATTTGCCCATTCCGAAAAATCTAAACGAAAGTGTCGAAAGCGTATCAATGAACACCATCTCACTGAACCAATGGGACTTATTCGAAACGAAATTCACCTGCCGTTGTATTAAAGAGTATAGTTCCTTCACCGAAGAAACCCGCCATTTGTGCAAAAGTTGCGAAGGTGACTTATTAGGTTTCCAACTATCGAAAGTGAAGGTAGGTATGGCCGAAAATCGTTTAAACTCATGCCAAAGTTCGGGTGAGCGCGTTTTAAATGCGCAACAAAGTGAGGTCAGTTGCGAGTACGGTTGTTCTGAAACGATGCGTTCAAGTTTAGAATCACCGTCTCCGCGTAAACAAAATCCACTTAACTCACCAAATGCCCGCCAAATCGATCCAAATTCTATGTTCACTGACGAATCATCTAATCAGAACGAAGCTAACTATGATTACAGCGATGTTCTAATGTGCAAGATGAAAGTGAGCAATGCGCAGAATGAAGTAAATATGTTGCGCAGTGTTAGCTATCGGCAGTACGATGATCGTAGAAGTGAACCAAGCGATGCTGAAAACAATTCGGCTGACCAAACATTCGATTTAGAGAAGAGACACAAATGTCCGATTTGCGTTAAAAAATACACTAGGCAATACGACTTATTTCGTCACTATAAAACACATAAAGTACCATTTATACGCTGTGTGCAATGTACCAAACAATACATGCGTCAAGAGGATTTAGACAAGCATATTCGAAAATCACACAAAGTTAAAAAACGGAAGTCTATAGTGCGTAAAGAAATCACACGTATTTTTCTTAAAGAACAACACAATTTTGAGCAAGACGATGACGAACCACATTTCATTTGTACGGTTTGCAGTGCAATTTTCGAAAGTCAATCGCTTTTAGCAGTACATTTAATGACCCACAAAAAAGAAttcaaatgcaaaaaatgCGATAAAGAGTTCTGGCATAAAGAAAAACTCACCGAGCACTTATTAACACATTCATTGCCGCGTATTTACCAATGTAGTTCCTGTAGCAAAAGCTTCAACTATTCCAGTAATTTGAAGCGCCACATGCGCGTTCACACCGCTTCAAATAAACGCGACACTAAAAACAACaaagaaaaacgaaacaacggcacaaaaaaaacaaaatctcATGATGAAAACATCAaccaaaataatacacaagaaATTGTGTTGTATAACCCAAAGACTGCATCGAAACAAAAGCGTggaaaaagtaataaaaaatcgCTAGAAATCGCGTTATACGATCCTTTAAAAACACCCGCAAATAGTAACATAATAGATGACGTCTTTAACTATGCGACGCCTGTACAAATTGGTGACTACGCATGCGTCGAAACAAATTGTAAGCAAtcttttgcaattttaaaagaatattacCGCCATTTACACGATCATAATACGTTACGGTCTAAAGCAGATAGAAAACCTTACAAATGCGTCGAATGTGGCAAACTCTGTGTACAAATTTCTACTCTATACAATCACATGCTAGTGCATCCTTCCGGGAagaataaaatcaatcattTACAACCGAAAGGTATGCGTTTCACTTGCAAGTATTGCCGAAAAGGATATAATTACATCAAGCATTTTAATCATCACGTCGCGAAACACAAATCGATTAAAGCAGAAACGGAAGATATGGATATGGATGATGTGAAAACTGAATTAATGGATGAGAACGACAATGATGAGATCCAAAATTCAACAGCGCAAACAAACGACCCGAAAGAATTCGCGTGCGTGCAATGTGATAAAAGTTACACGACTAAGCAAAGCTTAAAACGTCATATGCAAGCACATCCTATTCAAACGGAAAAATACTCATGTTCTATTTGCTTTAAGCAATTTCTCCAACTGGACGTTCTAGAACAACATATTCTAACTCACTCAAAACGCTCGACCGACGAATGGAATTGTGAAGTTTGCGATAAAGGGTTTATGCAAAAAGCGAATTTAAAACGCCATATGATGGTTCACGAAAGGCCGCTAGTCTGTCACCATTGTCGCGGTCGTTTCGATAATAAAAACGAGCTCGTGAAGCACATCATGAAATATGCGCGTGCGCAATATTGTAAGTTGTGCAAACTTGAATTTAGCATTCGCACCGATATGGAGAAACATATGCTTGAAGATCATACGAACTCGAAAGATTATTACTGCAATGTGTGCTCTATTAATTTCGAGAACGCTgaatattttcgaaaacaCGTTCTAATCCATCCACAAAAATTGGAAAGGAAATATGAATGCGCCTATTGCGAGAAAACATATCCTACTAAATCTGGATTGATTCGTCATAATCTTTCACACAAAGCTTAA
Protein Sequence
MFCFAKICRICLNASDSKLIKLNNLDYDKIRIREKLKFCIPEAINEKHLPELICINCCKNLRRSYSFKQMCLQNKDKLKKYASTLLVSKRHKYGNLSIGLVDFIEKNQVALNTSNDLPIPKNLNESVESVSMNTISLNQWDLFETKFTCRCIKEYSSFTEETRHLCKSCEGDLLGFQLSKVKVGMAENRLNSCQSSGERVLNAQQSEVSCEYGCSETMRSSLESPSPRKQNPLNSPNARQIDPNSMFTDESSNQNEANYDYSDVLMCKMKVSNAQNEVNMLRSVSYRQYDDRRSEPSDAENNSADQTFDLEKRHKCPICVKKYTRQYDLFRHYKTHKVPFIRCVQCTKQYMRQEDLDKHIRKSHKVKKRKSIVRKEITRIFLKEQHNFEQDDDEPHFICTVCSAIFESQSLLAVHLMTHKKEFKCKKCDKEFWHKEKLTEHLLTHSLPRIYQCSSCSKSFNYSSNLKRHMRVHTASNKRDTKNNKEKRNNGTKKTKSHDENINQNNTQEIVLYNPKTASKQKRGKSNKKSLEIALYDPLKTPANSNIIDDVFNYATPVQIGDYACVETNCKQSFAILKEYYRHLHDHNTLRSKADRKPYKCVECGKLCVQISTLYNHMLVHPSGKNKINHLQPKGMRFTCKYCRKGYNYIKHFNHHVAKHKSIKAETEDMDMDDVKTELMDENDNDEIQNSTAQTNDPKEFACVQCDKSYTTKQSLKRHMQAHPIQTEKYSCSICFKQFLQLDVLEQHILTHSKRSTDEWNCEVCDKGFMQKANLKRHMMVHERPLVCHHCRGRFDNKNELVKHIMKYARAQYCKLCKLEFSIRTDMEKHMLEDHTNSKDYYCNVCSINFENAEYFRKHVLIHPQKLERKYECAYCEKTYPTKSGLIRHNLSHKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01039488;
90% Identity
-
80% Identity
-