Nsal002103.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- -
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000013.1:398943-401413[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0016 0.16 13.3 2.0 1 23 319 341 319 341 0.97 2 14 0.26 25 6.4 0.1 3 23 348 368 347 368 0.97 3 14 0.0014 0.14 13.6 2.6 1 23 376 398 376 398 0.97 4 14 0.011 1.1 10.7 0.7 2 23 405 426 404 426 0.96 5 14 1.3e-06 0.00013 23.1 1.7 1 23 432 454 432 454 0.98 6 14 7e-06 0.00068 20.8 3.4 1 23 460 482 460 482 0.98 7 14 2.8e-06 0.00027 22.1 0.6 2 23 489 510 489 510 0.97 8 14 0.00028 0.028 15.7 2.1 1 23 516 538 516 538 0.95 9 14 2.1e-05 0.0021 19.3 0.9 1 23 543 565 543 565 0.98 10 14 0.0097 0.94 10.9 4.9 1 23 571 594 571 594 0.93 11 14 3.3e-05 0.0032 18.7 0.3 2 23 601 622 600 622 0.96 12 14 5.7e-06 0.00056 21.1 0.3 1 23 628 650 628 650 0.93 13 14 9.9e-06 0.00096 20.3 6.0 1 23 656 678 656 678 0.97 14 14 0.00032 0.031 15.6 5.2 1 23 684 707 684 707 0.96
Sequence Information
- Coding Sequence
- ATGTTGATTTCAAGTGAGCTTGATTTAAATGCTATGTGTAGAACATGTTTGTCGATTGGGGAAATGAAatcaatttatgaaataagTTCAGAATTAAGCTTCGCTGATATGTTAATGGTATGCACATCTGTAAAGtattatCCAGAAGCTGAAAATTTACCTTCACAAATTTGTGATGATTGTATTACTCAAATAAAACGATCGTACAAATTTGCGGTAAAGTGCCGCAAGTCAGAAGACAAATTGCagaattatttacaaaatattttaaacgcaAGAGcgaatttctttaaaaatgaaacGGAACACACTCAACAATTAGACGAAAATTCTCCCGAAATTGATTACAAATTTTCTGAATCACATAGCGAAACTACGCCAACTATTCGGATACGAAATGACCTAAACGGCCCAACACCAAACGAGCAAGATAGAACTAGTAACGAAACAATAACGTCCCAAAATCGGACTATCATCTGgctaaaaaatgaaattgatgATTCGTTACCaatcaatcaattaaaatgtaatattaaacttGAAAATGATTCCGAAATAGAGAATTCCTCACAAGATATTTTTGGTACAATATTTggcgaaattgaaaataatcaaaataataactcATTCAATGAACAATCTAGGATCAGTactaaaacaaattgtttaaaaaatgacttAAATTCGAAAGAAACTAAAAAAACTCGAAACGATCCAACAACTTGTCGATTAGCTAAGAATCTTCAAACTATTACGTCTCAAAATGAGGATTGTAAAAGTTCTGCGTTCAGAAATGGagacaaacatatttataaattaagaaaaacaaacactCCTTTACAATCGTATACTGAATATGATGATAGGCATAGTGAGTCATCGAGTAAAAATAGTGAATCATTAAGTAGTGATGATGATCACAGTGAACAATCAAAttgtgcaaataataaattatatgcaTGTACGCGGTGTAATCGTTCGtataaactagaaaaaaatttaatcactCATACAAAACAACACACTGAAGAATTAGCCGCTTGTAACATTTGCGGTGATATGTTTGCGTTTGGAAGTGCGTTAAAGTTTCATATGGCGACGCATGCAGAAGTGCAAAAAAAACGCCATAAATGCCAAGTGTGCGATTATCCATTCCACACACTGAATGATTTGAATGAACACGTGAAATTACACACCAGTGAGAACGTGTTATCGTGCTCATTTTGTGGGGACACATTCCAggaattaaaaacattaaaaatccACATGCAATCACATGATGACGAAAGACCCTACTCTTGTTCAAAATGTGATCGTAAATTTGCTAACAAATCCTATTTAGCATCACACCAAAAAGTCCACACCGACATAAAGCGACACAAATGTAACGTTTGCGGTCATCAATTTCGCAAATCTACTAACTTAAAAGCACACATGGCGATACACACGAATGCAAAATCGCGTTCTTGTTCAATATGTGGCAAATCGTTTTCgatcaattataaattagacgTGCATATGCGGACTCATACGAAAGAAAAACCGTTTTCTTGTATCATTTGCAACCATACATTCAGTAGCAAACCACAATTAACGCAACATATATCTACACACTCTGGACAAAGTTTCGTTTGCTCTATTTGCGGTAAAAACTTCATGGTTTATGAGCATTTACGGAATCATTTACTTATACATACTGATGAAAGGAAACATACTTGTACGATATGTGATAGTTCATACAAAACAAAGAGAAGTTTGTATAAACATTCTCAGAATAAACATCCTAAGGGTGATCCGGTTAGTTGTGCGATTTGTAGCAGATCGTTTATAAATAAGGAGCGTTTGCAACGCCATATACAAATCCATAACGATGATAAACCGTTTGCTTGTTCAGTTTGCGGTAAATCATTTCGCGGTAAGGCTAGTTTGAAGCAACATATGCCAACGCATTCGAACGAACGGACGCATTGTTGTACGATTTGCGACAAGGCATTCAAATTCACGTCCAATTTGAATCTTCATATGAAAACGCACAAAGATGATCGACCATTTGCGTGTACGCTTTGTGATTACACTTTTAAGCTCCAACATCATTTGAAAGCTCACCTTAAAAACAAGCAtccaacaaaaaattaa
- Protein Sequence
- MLISSELDLNAMCRTCLSIGEMKSIYEISSELSFADMLMVCTSVKYYPEAENLPSQICDDCITQIKRSYKFAVKCRKSEDKLQNYLQNILNARANFFKNETEHTQQLDENSPEIDYKFSESHSETTPTIRIRNDLNGPTPNEQDRTSNETITSQNRTIIWLKNEIDDSLPINQLKCNIKLENDSEIENSSQDIFGTIFGEIENNQNNNSFNEQSRISTKTNCLKNDLNSKETKKTRNDPTTCRLAKNLQTITSQNEDCKSSAFRNGDKHIYKLRKTNTPLQSYTEYDDRHSESSSKNSESLSSDDDHSEQSNCANNKLYACTRCNRSYKLEKNLITHTKQHTEELAACNICGDMFAFGSALKFHMATHAEVQKKRHKCQVCDYPFHTLNDLNEHVKLHTSENVLSCSFCGDTFQELKTLKIHMQSHDDERPYSCSKCDRKFANKSYLASHQKVHTDIKRHKCNVCGHQFRKSTNLKAHMAIHTNAKSRSCSICGKSFSINYKLDVHMRTHTKEKPFSCIICNHTFSSKPQLTQHISTHSGQSFVCSICGKNFMVYEHLRNHLLIHTDERKHTCTICDSSYKTKRSLYKHSQNKHPKGDPVSCAICSRSFINKERLQRHIQIHNDDKPFACSVCGKSFRGKASLKQHMPTHSNERTHCCTICDKAFKFTSNLNLHMKTHKDDRPFACTLCDYTFKLQHHLKAHLKNKHPTKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01039484;
- 90% Identity
- iTF_01039484;
- 80% Identity
- -