Basic Information

Insect: Nebria brevicollis
Gene Symbol: -
Assembly: GCA_944739395.1
Location: CALYJC010000014.1:1510865-1513257[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0017 0.16 13.4 2.0 1 23 293 315 293 315 0.97

2 14 0.51 48 5.6 0.1 3 23 322 342 321 342 0.96

3 14 0.00048 0.044 15.1 3.1 1 23 349 371 349 371 0.98

4 14 0.0087 0.81 11.2 0.8 2 23 378 399 377 399 0.97

5 14 4.7e-06 0.00044 21.4 4.2 1 23 405 427 405 427 0.98

6 14 7.2e-06 0.00067 20.9 3.4 1 23 433 455 433 455 0.98

7 14 2.9e-06 0.00027 22.1 0.6 2 23 462 483 462 483 0.97

8 14 6.8e-05 0.0063 17.8 0.7 1 23 489 511 489 511 0.95

9 14 2.2e-05 0.002 19.4 0.9 1 23 516 538 516 538 0.98

10 14 0.0014 0.13 13.7 5.0 1 23 544 567 544 567 0.93

11 14 0.00011 0.01 17.1 0.5 2 23 574 595 573 595 0.96

12 14 3.3e-05 0.0031 18.8 0.9 1 23 601 623 601 623 0.93

13 14 1e-05 0.00094 20.4 6.0 1 23 629 651 629 651 0.97

14 14 0.00033 0.031 15.6 5.2 1 23 657 680 657 680 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0017	0.16	13.4	2.0	1	23	293	315	293	315	0.97
2	14	0.51	48	5.6	0.1	3	23	322	342	321	342	0.96
3	14	0.00048	0.044	15.1	3.1	1	23	349	371	349	371	0.98
4	14	0.0087	0.81	11.2	0.8	2	23	378	399	377	399	0.97
5	14	4.7e-06	0.00044	21.4	4.2	1	23	405	427	405	427	0.98
6	14	7.2e-06	0.00067	20.9	3.4	1	23	433	455	433	455	0.98
7	14	2.9e-06	0.00027	22.1	0.6	2	23	462	483	462	483	0.97
8	14	6.8e-05	0.0063	17.8	0.7	1	23	489	511	489	511	0.95
9	14	2.2e-05	0.002	19.4	0.9	1	23	516	538	516	538	0.98
10	14	0.0014	0.13	13.7	5.0	1	23	544	567	544	567	0.93
11	14	0.00011	0.01	17.1	0.5	2	23	574	595	573	595	0.96
12	14	3.3e-05	0.0031	18.8	0.9	1	23	601	623	601	623	0.93
13	14	1e-05	0.00094	20.4	6.0	1	23	629	651	629	651	0.97
14	14	0.00033	0.031	15.6	5.2	1	23	657	680	657	680	0.96

Sequence Information

Coding Sequence: ATGAAGTCAATTTATGAACTAAGTTCAGAATTAAGCTTCGCTGATATGTTAATGGTATGCACATCTGTAAAGtattacCCAGAAGCTGAAAATTTACCATCGCAAATTTGTGACGATTGTATTACTGAAATAAAACGATCCTACAAATTTGCGGTGAAGTGCCGCAAGTCAGAAGACAAATTAcagaattatttacaaaatattttaaacgcaAAAGCGAATTTCTTTAAAACTGAAACAGAACACACGCAACAATTAGACGAAAATTCGCCAGAAATTGATTATAAATTAACCGAATCACATAGCGAAACTACGCCAACTATTCGAATACGAAATGACCTAAACGACCCCACACCAAATGAGCAAGATAGAATTACTAACGAAACAATAACGTCCCAAAATCGGACCATCATCTGGctaaaaaatgaaattgatGATTCATTACCAATCaatcaattaaaatgtaatattaaactCGAAAATGATTCCGAAATTGAGAATTCCTCACAAGATATTTTTGGTACAATATTTGGCGAACTTGAAAATAATCAAAGAAATAACTCATTTAATGAACAATCTAGGATCAGTAAAACAAATAGCTTAAAAAATGACATAAATTCGAAAGAAACTCGAAACAATCCAACAAATTGTCGTTTGACTAAGAATCTTCAAACTATTACGCCTCAAAATGAGCATTGTAAAAGTTCATCATTCAAAAATGgagataaacatatttataaattaagaaaaacaaaCACTCCCTTACAATCGTATACGGAATATGATGATAGCCATAGTAAGTCATCGAGTGAAATTAGTGAATCATTAAGTAGTGATGAACACAGTGAACAATCAAATtgtgcaaataataaattatatgcatGTACGCGGTGTAATCGTTCATATAAActagaaaaaaatttaatcacTCACACAAAACAACACACTGAGGAATTAGTCGCTTGTAACATTTGCGGGGATATGTTTGCGTTTGGAAGTACGTTAAAGTTTCATATGGCGTCGCATGCAGAAGCAAAAAAACGCCATAAATGCCAAGTGTGCGATTATCCATTCCACACACTGAATTATTTGAATGAACACATAAAAATACACACTAGGGAGAACGTGTTAACTTGCTCATTTTGTGGGGACACATTCCAggaattaaaaacattaaaaatccACATGCAATCACATGATGACGAAAGACCCTACTCTTGTTCAAAATGTGATCGTAAATTTGCTCATAAATCCTATTTAACCTCACACCAAAACGTACACACTGACATAAAACGACATAAATGTAACGTTTGCGGTCATCAATTCCGCAAATCAACGAACTTAAAAGCACACATGGCGATTCACACGAATGCAAAATCGCGTTCTTGTTCAATATGTGGCAAATCGTTTTCgatcaattataaattagacgTACATATGCGGACTCATACGAAAGAGAAACCGTTTTCTTGTATCATTTGCAACCAATCATTCAGTAGTAAACCACAATTAACGCAacatatatctacacactctGGACAAAGTTTCGTTTGTTCGATTTGCGGTAAAAACTTTATGGTTTATGAGCATTTACGGAATCATTTACTTATACATACTGATGAAAAGAAACATACTTGTACAATATGTGATACATCATACAAAACAAAGAGAAGTTTGTATAAACATTCGCAGAATAAACATCCTAAGGGTGATCCGGTTAGTTGTGCGATTTGTAGTAGATCGTTTATCAATAAGGAGCGTTTGCAACGTCATACACAAATCCATAACGATGAAAAACCGTTTTCGTGTTCAGTTTGCAGTAAATCATTTCGTGGTAAGGCTAGTTTGAAGCAACATATGCCAACGCATTCGAACGAACGGACGCATTGTTGTACGATTTGCGACAAGGCATTCAAATTCACGTCCAATTTGAATCTTCATATGAAGACGCACAAAGATGATCGACCATTTGCGTGTACGCTTTGTGATTACACGTTTAAGCTACAACATCATTTGAAAGCTCatcttaaaaacaaacatCCATCTAAagcttaa
Protein Sequence: MKSIYELSSELSFADMLMVCTSVKYYPEAENLPSQICDDCITEIKRSYKFAVKCRKSEDKLQNYLQNILNAKANFFKTETEHTQQLDENSPEIDYKLTESHSETTPTIRIRNDLNDPTPNEQDRITNETITSQNRTIIWLKNEIDDSLPINQLKCNIKLENDSEIENSSQDIFGTIFGELENNQRNNSFNEQSRISKTNSLKNDINSKETRNNPTNCRLTKNLQTITPQNEHCKSSSFKNGDKHIYKLRKTNTPLQSYTEYDDSHSKSSSEISESLSSDEHSEQSNCANNKLYACTRCNRSYKLEKNLITHTKQHTEELVACNICGDMFAFGSTLKFHMASHAEAKKRHKCQVCDYPFHTLNYLNEHIKIHTRENVLTCSFCGDTFQELKTLKIHMQSHDDERPYSCSKCDRKFAHKSYLTSHQNVHTDIKRHKCNVCGHQFRKSTNLKAHMAIHTNAKSRSCSICGKSFSINYKLDVHMRTHTKEKPFSCIICNQSFSSKPQLTQHISTHSGQSFVCSICGKNFMVYEHLRNHLLIHTDEKKHTCTICDTSYKTKRSLYKHSQNKHPKGDPVSCAICSRSFINKERLQRHTQIHNDEKPFSCSVCSKSFRGKASLKQHMPTHSNERTHCCTICDKAFKFTSNLNLHMKTHKDDRPFACTLCDYTFKLQHHLKAHLKNKHPSKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01041112;
90% Identity: iTF_01041112;
80% Identity: -