Basic Information

Insect: Nebria salina
Gene Symbol: -
Assembly: GCA_944039265.1
Location: CALUEJ010000013.1:107324-109079[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00029 0.028 15.7 2.4 1 23 174 198 174 198 0.93

2 11 0.024 2.4 9.7 1.2 3 23 205 224 204 224 0.97

3 11 1.2e-07 1.1e-05 26.4 1.1 1 23 229 251 229 251 0.98

4 11 3.4e-06 0.00033 21.8 0.6 1 23 260 282 260 282 0.99

5 11 5.6e-06 0.00054 21.1 0.6 1 23 288 310 288 310 0.97

6 11 7.1e-06 0.00069 20.8 0.6 1 23 329 351 329 351 0.98

7 11 0.0029 0.28 12.6 2.1 1 23 356 378 356 378 0.94

8 11 4.2e-06 0.00041 21.5 0.3 1 23 384 406 384 406 0.98

9 11 1.4e-05 0.0014 19.9 4.8 1 23 412 434 412 434 0.98

10 11 1.1e-07 1.1e-05 26.4 0.5 1 23 440 462 440 462 0.98

11 11 9.6e-06 0.00093 20.4 2.9 1 23 468 490 468 490 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00029	0.028	15.7	2.4	1	23	174	198	174	198	0.93
2	11	0.024	2.4	9.7	1.2	3	23	205	224	204	224	0.97
3	11	1.2e-07	1.1e-05	26.4	1.1	1	23	229	251	229	251	0.98
4	11	3.4e-06	0.00033	21.8	0.6	1	23	260	282	260	282	0.99
5	11	5.6e-06	0.00054	21.1	0.6	1	23	288	310	288	310	0.97
6	11	7.1e-06	0.00069	20.8	0.6	1	23	329	351	329	351	0.98
7	11	0.0029	0.28	12.6	2.1	1	23	356	378	356	378	0.94
8	11	4.2e-06	0.00041	21.5	0.3	1	23	384	406	384	406	0.98
9	11	1.4e-05	0.0014	19.9	4.8	1	23	412	434	412	434	0.98
10	11	1.1e-07	1.1e-05	26.4	0.5	1	23	440	462	440	462	0.98
11	11	9.6e-06	0.00093	20.4	2.9	1	23	468	490	468	490	0.98

Sequence Information

Coding Sequence: ATGTCAACCTATCACAACACATTTGATTTCGATAAAGTTTGCCGAACTTGTTTGTCAACTGAAGAATTAAAACCGATATGCAGTAATACTTCTACAAACGTTTGTTTGATTGAAATGTTAATGTTATGTACATTTGTGGAATATCAAGAAGAAGATGATTTACCAGgacaaatttgtaaaaattgtattgaaCAAATTAAGGAGTCATACAATTTCGCATTAAAATGTCAAGAATCTGAAGAAAAGTTACGATTAAGTTtaagtaatgaaaataaacaattaaataataaaatgaaaattactaaaaaagcAACTAATATAAgctcaaataataaaaaatcgaaaattgaaaacaatcaaaatatagaactagcaaatattaatatgaaaattgaaAACGATCACAGTGAACTATCAAAcgatgaaaattatattgatgATGAACTATCAAATAACGAAAGCGTAAAAAAGAGAAAAACCAGAAAAACAGTTAAGAGAAAAGTGATACAAAAACCTTCATACGAATGTAAAAAATGCAATATCAAATTCACAACCTACACATTATTATTAGATCATTAccgcaaaataaaacataaaaacatgaAACAAGCTTGTCAAATCTGCTCGAAATTATACACGCCGAAATTTCTAAAGCAACACTTGCGACGCCACGCGAATTTGAAATACAAATGCGAGTTGTGCGACAAAGAATTCACAACAGCATCGAATTTATGGCGGCACAAGAAGCTGCATGAAGTTAGCGTCGATGAAAAACCGTACAAGTGTGATATGTGCAATGCTGGCTTTACACAGTCGTACGCGTTAAAAGAACATCGCCGTATTCACACCGGTGAAAAACCATTCGTATGTGATATTTGCGGGAAATCATTCCGCAAAAccatgcaattaaaaatacattcaaaCATACATTGCCGCAAAGGTACTAAAAAAAACGCTACTGATActcaaaatatacaaaaacagTATCAATGTGATAGTTGCGAAAAAAGTTTCGATACGAAACCGCTGTTGAAGCAACACCAATTAATACACGGTGAGAAGAAGTTTTTATGCAGCGAGTGCGGTTGCCGCTTTTATAGTTTGCGATCGTTACAAATGCACGCGCAACTTCACAGCGATGTGAAACCGTACACATGCGCATTATGTGAGAAATCGTTTCGTTACCTTGGCGCTTTGCAACGTCACCAATTGGTGCACACTGGGGAAAGACCGTACGCGTGCACTCTGTGTGACCGCTCTTTTAAGCAACAAACACACTTAAAGTTCCACATGCGCACGCACACTGGTGAACGTCCGCATGTGTGTTCCGTGTGCGGGAAAACGTTCGCGTTAAACGGTAATTTGACGGTGCATATGCGAATGCACACGGGGGAAATGCCGTACACGTGCACCGTGTGCGGGAAAGGTTTTCACGATTCTAGTTCGatgaaaaaacataaaagGGGACATGGTGAACtagatcatatttaa
Protein Sequence: MSTYHNTFDFDKVCRTCLSTEELKPICSNTSTNVCLIEMLMLCTFVEYQEEDDLPGQICKNCIEQIKESYNFALKCQESEEKLRLSLSNENKQLNNKMKITKKATNISSNNKKSKIENNQNIELANINMKIENDHSELSNDENYIDDELSNNESVKKRKTRKTVKRKVIQKPSYECKKCNIKFTTYTLLLDHYRKIKHKNMKQACQICSKLYTPKFLKQHLRRHANLKYKCELCDKEFTTASNLWRHKKLHEVSVDEKPYKCDMCNAGFTQSYALKEHRRIHTGEKPFVCDICGKSFRKTMQLKIHSNIHCRKGTKKNATDTQNIQKQYQCDSCEKSFDTKPLLKQHQLIHGEKKFLCSECGCRFYSLRSLQMHAQLHSDVKPYTCALCEKSFRYLGALQRHQLVHTGERPYACTLCDRSFKQQTHLKFHMRTHTGERPHVCSVCGKTFALNGNLTVHMRMHTGEMPYTCTVCGKGFHDSSSMKKHKRGHGELDHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01039482;
90% Identity: iTF_01039482;
80% Identity: -