Nbre001494.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- -
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000014.1:1800037-1801803[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00031 0.029 15.7 2.4 1 23 178 202 178 202 0.93 2 11 0.026 2.4 9.7 1.2 3 23 209 228 208 228 0.97 3 11 1.2e-07 1.2e-05 26.4 1.1 1 23 233 255 233 255 0.98 4 11 3.6e-06 0.00034 21.8 0.6 1 23 264 286 264 286 0.99 5 11 6e-06 0.00056 21.1 0.6 1 23 292 314 292 314 0.97 6 11 7.6e-06 0.00071 20.8 0.6 1 23 333 355 333 355 0.98 7 11 0.0032 0.3 12.5 2.1 1 23 360 382 360 382 0.94 8 11 4.6e-06 0.00042 21.5 0.3 1 23 388 410 388 410 0.98 9 11 1.5e-05 0.0014 19.8 4.8 1 23 416 438 416 438 0.98 10 11 1.2e-07 1.2e-05 26.4 0.5 1 23 444 466 444 466 0.98 11 11 2.4e-05 0.0023 19.2 3.0 1 23 472 494 472 494 0.97
Sequence Information
- Coding Sequence
- ATGTCAACCTATCACAATACATTTGATTTCGATAAAGTTTGCCGAACTTGTTTGTCAACTGAAGAATTAAAACCGTTATGCAGTAATACTTCTACAAACGTTTGTTTGATTGAAATGTTAATGTTATGTACATTTGTGGAATATCAAGAAGAAGATGATTTACCAGgacaaatttgtaaaaattgtATTGAACAAATTAAGGAGTCATacaattttgcattaaaatgTCAAGAATCTGAACAAAAGTTACGATTAAGTTTAactaatgaaaataaacaattaaataataaaatgaaaaatactaaaaaaacaactaatataagctcaaataataaaaaatcgaaaattgaaaacaatcaaaatatagaactatcaaatattaatataaaaactgaAAACGACACTGAAAACTGTCACAGTGAACTATCAAACGATGGAAACTATATTGGTGATGAAGTATCAAATAACGAAAGCGTAAAAAAGAGAAAAACTAGAAAAACAGTTAAGAGAAAAGTGATACAAAAACCTTCATACGAGTGTAAAAAATGCAATATCAAAttcacaacatacacattattaTTAGATCATTACcgcaaaataaaacataaaaacatgaAACAAGCTTGTCAAATTTGCTCGAAATTATATACGCCGAAATTTCTAAAGCAGCACTTACGACGCCACGCGAATTTGAAATACAAATGCGAGTTGTGCGACAAAGAATTTACAACCGCATCGAATTTATGGCGACATAAGAAGCTGCATGAAGTTAGCGTCGATGAAAAGCCGTACAAGTGTGATATGTGCAATGCTGGCTTTACACAGTCGTACGCGTTAAAAGAACATCGCCGTATTCACACCGGTGAAAAACCATTCGTATGTGATATTTGCGGGAAATCATTCCGCAAAACCATGCAGttaaaaatacattcaaaCATACATTGCCGCAaagGTACTAAAAAAAACGCTACTGATACtcaatatatacaaaaacagTATCAATGTGATAGTTGCGAAAAAAGTTTCGATACTAAACCGCTGTTGAAGCAACACCAATTGATACACGGTGAAAAGAAGTTCTTATGCAGCGAGTGCGGTTGCCGCTTTTATAGTTTGCGATCGTTACAAATGCACGCGCAACTTCACAGCGATGTGAAACCGTACACGTGTGCATTATGTGAGAAATCGTTTCGTTACCTAGGCGCTTTGCAACGTCACCAATTGGTGCACACTGGGGAAAGACCGTACGCGTGCACTCTGTGTGACCGCTCATTTAAGcaacaaacacacttaaagtTCCACATGCGCACTCACACCGGTGAACGTCCGCATGTGTGTTCCGTGTGCGGAAAAACGTTCGCGTTAAACGGTAATTTGACCGTGCATATGAGAATGCACACGGGGGAAATGCCGTACACGTGCACTGTGTGCGGAAAAGGTTTCCATGATTCTAGTTCGatgaaaaaacataaaaagGGACATGGTGAACTAGatcatatttag
- Protein Sequence
- MSTYHNTFDFDKVCRTCLSTEELKPLCSNTSTNVCLIEMLMLCTFVEYQEEDDLPGQICKNCIEQIKESYNFALKCQESEQKLRLSLTNENKQLNNKMKNTKKTTNISSNNKKSKIENNQNIELSNINIKTENDTENCHSELSNDGNYIGDEVSNNESVKKRKTRKTVKRKVIQKPSYECKKCNIKFTTYTLLLDHYRKIKHKNMKQACQICSKLYTPKFLKQHLRRHANLKYKCELCDKEFTTASNLWRHKKLHEVSVDEKPYKCDMCNAGFTQSYALKEHRRIHTGEKPFVCDICGKSFRKTMQLKIHSNIHCRKGTKKNATDTQYIQKQYQCDSCEKSFDTKPLLKQHQLIHGEKKFLCSECGCRFYSLRSLQMHAQLHSDVKPYTCALCEKSFRYLGALQRHQLVHTGERPYACTLCDRSFKQQTHLKFHMRTHTGERPHVCSVCGKTFALNGNLTVHMRMHTGEMPYTCTVCGKGFHDSSSMKKHKKGHGELDHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041111;
- 90% Identity
- iTF_01041111;
- 80% Identity
- -